Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRIM46
  • Mouse genes Trim46
  • Rat genes Trim46
  • Zfish genes trim46a,trim46b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trim46

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Cellular Component	GO:0043194	axon initial segment	Trim46	IDA		Mouse	PMID:26671463
Cellular Component	GO:0044304	main axon	Trim46	IDA		Mouse	MGI:MGI:6148385|PMID:28426968
Cellular Component	GO:0044304	main axon	Trim46	IDA		Rat	PMID:28426968|RGD:13514087
Cellular Component	GO:1990769	proximal neuron projection	Trim46	IMP		Mouse	PMID:26671463
Biological Process	GO:0048490	anterograde synaptic vesicle transport	Trim46	IMP		Mouse	PMID:26671463
Biological Process	GO:0007409	axonogenesis	Trim46	IMP		Mouse	PMID:26671463
Biological Process	GO:0007409	axonogenesis	Trim46	IDA		Mouse	PMID:26671463
Biological Process	GO:0001578	microtubule bundle formation	Trim46	IMP		Mouse	PMID:26671463
Biological Process	GO:0000226	microtubule cytoskeleton organization	Trim46	IMP		Mouse	PMID:26671463
Biological Process	GO:0030517	negative regulation of axon extension	Trim46	IMP		Rat	PMID:28426968|RGD:13514087
Biological Process	GO:0001764	neuron migration	Trim46	IDA		Mouse	PMID:26671463
Biological Process	GO:0001764	neuron migration	Trim46	IMP		Mouse	PMID:26671463
Biological Process	GO:1901953	positive regulation of anterograde dense core granule transport	Trim46	IMP		Rat	PMID:28426968|RGD:13514087
Biological Process	GO:0099612	protein localization to axon	Trim46	IMP		Mouse	PMID:26671463
Biological Process	GO:0032880	regulation of protein localization	Trim46	IMP		Mouse	MGI:MGI:6148385|PMID:28426968
Biological Process	GO:0032880	regulation of protein localization	Trim46	IMP		Rat	PMID:28426968|RGD:13514087

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern