Comparative GO Graph (mouse, human, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRMT2B
  • Mouse genes Trmt2b
  • Rat genes
  • Zfish genes trmt2b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trmt2b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TRMT2B	IPI	UniProtKB:P07992	Human	PMID:25416956
Molecular Function	GO:0070041	rRNA (uridine-C5-)-methyltransferase activity	TRMT2B	IDA		Human	PMID:31948311
Molecular Function	GO:0070041	rRNA (uridine-C5-)-methyltransferase activity	TRMT2B	IDA		Human	PMID:34556860
Molecular Function	GO:0070041	rRNA (uridine-C5-)-methyltransferase activity	Trmt2b	IDA		Mouse	MGI:MGI:6714531|PMID:31736397
Molecular Function	GO:0030697	S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity	TRMT2B	IDA		Human	PMID:31948311
Molecular Function	GO:0030697	S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity	Trmt2b	IDA		Mouse	MGI:MGI:6714531|PMID:31736397
Cellular Component	GO:0005739	mitochondrion	TRMT2B	IDA		Human	PMID:31948311
Cellular Component	GO:0005739	mitochondrion	Trmt2b	HDA		Mouse	PMID:18614015

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern