Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRNT1
  • Mouse genes Trnt1
  • Rat genes Trnt1
  • Zfish genes trnt1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trnt1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0004810	CCA tRNA nucleotidyltransferase activity	TRNT1	IDA		Human	PMID:11504732
Molecular Function	GO:0000049	tRNA binding	TRNT1	IDA		Human	PMID:11504732
Molecular Function	GO:0000049	tRNA binding	TRNT1	EXP		Human	PMID:12729736
Cellular Component	GO:0005739	mitochondrion	TRNT1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005739	mitochondrion	TRNT1	IDA		Human	PMID:11504732
Cellular Component	GO:0005739	mitochondrion	Trnt1	HDA		Mouse	PMID:18614015
Biological Process	GO:0001654	eye development	trnt1	IMP	ZFIN:ZDB-MRPHLNO-160308-4	Zfish	PMID:26494905
Biological Process	GO:1990180	mitochondrial tRNA 3'-end processing	TRNT1	IDA		Human	PMID:11504732
Biological Process	GO:0001966	thigmotaxis	trnt1	IMP	ZFIN:ZDB-MRPHLNO-160308-3	Zfish	PMID:26494905
Biological Process	GO:0001680	tRNA 3'-terminal CCA addition	TRNT1	IDA		Human	PMID:25193871
Biological Process	GO:0008033	tRNA processing	trnt1	IMP	ZFIN:ZDB-MRPHLNO-160308-3	Zfish	PMID:26494905
Biological Process	GO:0007632	visual behavior	trnt1	IMP	ZFIN:ZDB-MRPHLNO-160308-3	Zfish	PMID:26494905

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern