Comparative GO Graph (mouse, human, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRRAP
  • Mouse genes Trrap
  • Rat genes
  • Zfish genes trrap
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trrap

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TRRAP	IPI	UniProtKB:Q01094	Human	PMID:11418595
Molecular Function	GO:0005515	protein binding	TRRAP	IPI	UniProtKB:Q16254	Human	PMID:11418595
Molecular Function	GO:0005515	protein binding	TRRAP	IPI	UniProtKB:O15265	Human	PMID:15115762
Molecular Function	GO:0005515	protein binding	TRRAP	IPI	UniProtKB:P01106	Human	PMID:17314511
Molecular Function	GO:0005515	protein binding	TRRAP	IPI	UniProtKB:P01106	Human	PMID:21150319
Molecular Function	GO:0005515	protein binding	TRRAP	IPI	UniProtKB:O15265	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	TRRAP	IPI	UniProtKB:P01106	Human	PMID:35140242
Molecular Function	GO:0005515	protein binding	TRRAP	IPI	UniProtKB:P01106	Human	PMID:9708738
Molecular Function	GO:0005515	protein binding	Trrap	IPI	UniProtKB:Q8R4I1	Mouse	MGI:MGI:4462751|PMID:20508642
Molecular Function	GO:0005515	protein binding	Trrap	IPI	UniProtKB:Q9JHD2	Mouse	MGI:MGI:3620296|PMID:16494529
Molecular Function	GO:0005515	protein binding	Trrap	IPI	UniProtKB:Q9JHD2	Mouse	MGI:MGI:4462751|PMID:20508642
Molecular Function	GO:0005515	protein binding	Trrap	IPI	UniProtKB:Q8R4I1	Mouse	MGI:MGI:3620296|PMID:16494529
Molecular Function	GO:0005515	protein binding	Trrap	IPI	UniProtKB:Q9JHD2	Mouse	MGI:MGI:4889165|PMID:20946988
Molecular Function	GO:0003713	transcription coactivator activity	Trrap	IDA		Mouse	PMID:12464179
Molecular Function	GO:0003712	transcription coregulator activity	TRRAP	IDA		Human	PMID:11418595
Cellular Component	GO:0005794	Golgi apparatus	TRRAP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0035267	NuA4 histone acetyltransferase complex	TRRAP	IDA		Human	PMID:27153538
Cellular Component	GO:0035267	NuA4 histone acetyltransferase complex	TRRAP	IDA		Human	PMID:10966108
Cellular Component	GO:0035267	NuA4 histone acetyltransferase complex	TRRAP	IDA		Human	PMID:14966270
Cellular Component	GO:0005654	nucleoplasm	TRRAP	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000786	nucleosome	TRRAP	IDA		Human	PMID:27153538
Cellular Component	GO:0005634	nucleus	TRRAP	IDA		Human	PMID:9708738
Cellular Component	GO:0000124	SAGA complex	TRRAP	IDA		Human	PMID:11564863
Cellular Component	GO:0000124	SAGA complex	Trrap	IDA		Mouse	PMID:28893950
Cellular Component	GO:0000812	Swr1 complex	TRRAP	IDA		Human	PMID:24463511
Cellular Component	GO:0033276	transcription factor TFTC complex	TRRAP	IDA		Human	PMID:10373431
Cellular Component	GO:0005667	transcription regulator complex	Trrap	IDA		Mouse	PMID:12464179
Biological Process	GO:0043968	histone H2A acetylation	TRRAP	IDA		Human	PMID:27153538
Biological Process	GO:0043966	histone H3 acetylation	TRRAP	IDA		Human	PMID:10373431
Biological Process	GO:0043967	histone H4 acetylation	TRRAP	IDA		Human	PMID:27153538
Biological Process	GO:0007093	mitotic cell cycle checkpoint signaling	Trrap	IMP	MGI:MGI:2446468	Mouse	PMID:11544477
Biological Process	GO:0035521	monoubiquitinated histone deubiquitination	TRRAP	IDA		Human	PMID:18206972
Biological Process	GO:0035522	monoubiquitinated histone H2A deubiquitination	TRRAP	IDA		Human	PMID:18206972
Biological Process	GO:0035675	neuromast hair cell development	trrap	IMP	ZFIN:ZDB-MRPHLNO-200916-3	Zfish	PMID:31231791
Biological Process	GO:0035675	neuromast hair cell development	trrap	IMP	ZFIN:ZDB-GENO-210212-1	Zfish	PMID:31231791
Biological Process	GO:1905168	positive regulation of double-strand break repair via homologous recombination	TRRAP	IDA		Human	PMID:27153538
Biological Process	GO:0051726	regulation of cell cycle	TRRAP	IMP		Human	PMID:27153538
Biological Process	GO:0006355	regulation of DNA-templated transcription	Trrap	IDA		Mouse	PMID:12464179
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	TRRAP	IDA		Human	PMID:9603525
Biological Process	GO:0001964	startle response	trrap	IMP	ZFIN:ZDB-GENO-210212-1	Zfish	PMID:31231791
Biological Process	GO:0001964	startle response	trrap	IMP	ZFIN:ZDB-GENO-210212-2	Zfish	PMID:31231791
Biological Process	GO:0001964	startle response	trrap	IMP	ZFIN:ZDB-MRPHLNO-200916-3	Zfish	PMID:31231791

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern