Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TSFM
  • Mouse genes Tsfm
  • Rat genes Tsfm
  • Zfish genes tsfm
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tsfm

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:Q15311	Human	PMID:25910212
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:Q8NHQ1	Human	PMID:25910212
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:A6NEM1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:O95995	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:Q07627	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:Q15311	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:Q6PUV4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:Q8N998	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:Q8NHQ1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TSFM	IPI	UniProtKB:Q99750	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	TSFM	HDA		Human	PMID:22681889
Cellular Component	GO:0005739	mitochondrion	TSFM	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005739	mitochondrion	Tsfm	HDA		Mouse	PMID:18614015
Cellular Component	GO:0005654	nucleoplasm	TSFM	IDA		Human	GO_REF:0000052
Biological Process	GO:0070129	regulation of mitochondrial translation	TSFM	IDA		Human	PMID:27677415

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern