Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TSPAN1
  • Mouse genes Tspan1
  • Rat genes Tspan1
  • Zfish genes tspan34,tspan35
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tspan1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TSPAN1	IPI	UniProtKB:O60779	Human	PMID:21836059
Molecular Function	GO:0005515	protein binding	TSPAN1	IPI	UniProtKB:Q00059	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TSPAN1	IPI	UniProtKB:Q96HE8	Human	PMID:32296183
Cellular Component	GO:0030054	cell junction	TSPAN1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005737	cytoplasm	TSPAN1	IDA		Human	PMID:12115476
Cellular Component	GO:0070062	extracellular exosome	TSPAN1	HDA		Human	PMID:19056867
Cellular Component	GO:0070062	extracellular exosome	TSPAN1	HDA		Human	PMID:23533145
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	TSPAN1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016020	membrane	TSPAN1	IDA		Human	PMID:12115476
Cellular Component	GO:0005654	nucleoplasm	TSPAN1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0048471	perinuclear region of cytoplasm	TSPAN1	IDA		Human	PMID:22378020
Cellular Component	GO:0005886	plasma membrane	TSPAN1	IDA		Human	PMID:21836059
Cellular Component	GO:0031982	vesicle	TSPAN1	HDA		Human	PMID:19190083
Cellular Component	GO:0031982	vesicle	TSPAN1	IDA		Human	PMID:21836059
Biological Process	GO:0050821	protein stabilization	TSPAN1	IDA		Human	PMID:21836059

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern