Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TUB
  • Mouse genes Tub
  • Rat genes Tub
  • Zfish genes tub
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tub

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001664	G protein-coupled receptor binding	TUB	IDA		Human	PMID:28154160
Molecular Function	GO:0120160	intraciliary transport particle A binding	TUB	IDA		Human	PMID:28154160
Molecular Function	GO:0005515	protein binding	Tub	IPI	UniProtKB:Q9Z273	Mouse	MGI:MGI:4441109|PMID:19837063
Molecular Function	GO:0044877	protein-containing complex binding	TUB	IDA		Human	PMID:20889716
Cellular Component	GO:0005929	cilium	TUB	IDA		Human	PMID:28154160
Cellular Component	GO:0005737	cytoplasm	TUB	IDA		Human	PMID:28154160
Cellular Component	GO:0005829	cytosol	Tub	IMP	MGI:MGI:1861349	Mouse	PMID:11925566
Cellular Component	GO:0005576	extracellular region	Tub	IDA		Mouse	PMID:19695251
Cellular Component	GO:0005634	nucleus	TUB	IDA		Human	PMID:28154160
Biological Process	GO:0042073	intraciliary transport	TUB	IDA		Human	PMID:28154160
Biological Process	GO:0006910	phagocytosis, recognition	Tub	IDA		Mouse	PMID:20978472
Biological Process	GO:0006910	phagocytosis, recognition	Tub	IMP	MGI:MGI:1861349	Mouse	PMID:19837063
Biological Process	GO:0045494	photoreceptor cell maintenance	Tub	IMP	MGI:MGI:1857081	Mouse	PMID:10629044
Biological Process	GO:0050766	positive regulation of phagocytosis	TUB	IDA		Human	PMID:19837063
Biological Process	GO:0061512	protein localization to cilium	Tub	IMP	MGI:MGI:1861349	Mouse	PMID:28154160
Biological Process	GO:1903546	protein localization to photoreceptor outer segment	Tub	IMP	MGI:MGI:1861349	Mouse	PMID:23351594
Biological Process	GO:0097500	receptor localization to non-motile cilium	Tub	IMP	MGI:MGI:1861349	Mouse	PMID:24316073
Biological Process	GO:0097500	receptor localization to non-motile cilium	Tub	IMP	MGI:MGI:1861349	Mouse	PMID:23351594
Biological Process	GO:0008277	regulation of G protein-coupled receptor signaling pathway	Tub	IMP	MGI:MGI:1861349	Mouse	PMID:28154160
Biological Process	GO:0009725	response to hormone	Tub	IEP		Rat	PMID:11415982|RGD:1357166
Biological Process	GO:0060041	retina development in camera-type eye	Tub	IMP		Mouse	PMID:21052544
Biological Process	GO:0007605	sensory perception of sound	Tub	IMP		Mouse	PMID:21052544
Biological Process	GO:0007605	sensory perception of sound	Tub	IMP	MGI:MGI:1861349	Mouse	PMID:11925566

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern