Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes UBAP1
  • Mouse genes Ubap1
  • Rat genes Ubap1
  • Zfish genes ubap1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ubap1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	UBAP1	IPI	UniProtKB:P45877	Human	PMID:25416956
Molecular Function	GO:0043130	ubiquitin binding	UBAP1	IDA		Human	PMID:21757351
Cellular Component	GO:0005737	cytoplasm	UBAP1	IDA		Human	GO_REF:0000054
Cellular Component	GO:0005829	cytosol	UBAP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	UBAP1	IDA		Human	PMID:21757351
Cellular Component	GO:0000813	ESCRT I complex	UBAP1	IPI		Human	PMID:21757351
Cellular Component	GO:0000813	ESCRT I complex	UBAP1	IDA		Human	PMID:21757351
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	UBAP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005886	plasma membrane	UBAP1	IDA		Human	GO_REF:0000052
Biological Process	GO:0048675	axon extension	ubap1	IMP	ZFIN:ZDB-MRPHLNO-191213-2	Zfish	PMID:31203368
Biological Process	GO:0048675	axon extension	ubap1	IMP	ZFIN:ZDB-MRPHLNO-191213-1	Zfish	PMID:31203368
Biological Process	GO:0043162	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	UBAP1	IMP		Human	PMID:21757351

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern