Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes UBD
  • Mouse genes Ubd
  • Rat genes Ubd
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ubd

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0070628	proteasome binding	UBD	IDA		Human	PMID:16707496
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q13257	Human	PMID:10200259
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q9Y5A7	Human	PMID:14757770
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q13257	Human	PMID:16495226
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q9Y5A7	Human	PMID:16707496
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:A0AVT1	Human	PMID:17889673
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q9UBN7	Human	PMID:19033385
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q9H832	Human	PMID:24528925
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:A0AVT1	Human	PMID:25422469
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:P04637	Human	PMID:25422469
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q13257	Human	PMID:25422469
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q13501	Human	PMID:25422469
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q9UBN7	Human	PMID:25422469
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q9Y5A7	Human	PMID:25422469
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:Q13387	Human	PMID:25814554
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:O76083-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:O60260-5	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	UBD	IPI	UniProtKB:P37840	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Ubd	IPI	UniProtKB:Q8C7R4	Mouse	MGI:MGI:3813523|PMID:17889673
Cellular Component	GO:0016235	aggresome	UBD	IDA		Human	PMID:19033385
Cellular Component	GO:0005737	cytoplasm	Ubd	IDA		Mouse	MGI:MGI:4821085|PMID:11445583
Cellular Component	GO:0001650	fibrillar center	UBD	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	UBD	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	UBD	IDA		Human	PMID:12730673
Cellular Component	GO:0005634	nucleus	Ubd	IDA		Mouse	MGI:MGI:4821085|PMID:11445583
Biological Process	GO:0070842	aggresome assembly	UBD	IDA		Human	PMID:19033385
Biological Process	GO:0043011	myeloid dendritic cell differentiation	UBD	IMP		Human	PMID:19028597
Biological Process	GO:0043065	positive regulation of apoptotic process	UBD	IMP		Human	PMID:16495380
Biological Process	GO:0043065	positive regulation of apoptotic process	Ubd	IEP		Mouse	MGI:MGI:3640020|PMID:16782901
Biological Process	GO:0043065	positive regulation of apoptotic process	Ubd	IMP		Mouse	MGI:MGI:4821085|PMID:11445583
Biological Process	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	UBD	IMP		Human	PMID:19959714
Biological Process	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	Ubd	IMP		Mouse	MGI:MGI:4821931|PMID:19959714
Biological Process	GO:0016567	protein ubiquitination	UBD	IDA		Human	PMID:15831455
Biological Process	GO:0016567	protein ubiquitination	UBD	IDA		Human	PMID:17889673
Biological Process	GO:0016567	protein ubiquitination	Ubd	IMP		Mouse	MGI:MGI:3813523|PMID:17889673
Biological Process	GO:0016567	protein ubiquitination	Ubd	IMP		Mouse	MGI:MGI:4821085|PMID:11445583
Biological Process	GO:1901990	regulation of mitotic cell cycle phase transition	UBD	IMP		Human	PMID:16495226
Biological Process	GO:0001666	response to hypoxia	Ubd	IEP		Rat	PMID:29438664|RGD:126925221
Biological Process	GO:0002931	response to ischemia	Ubd	IEP		Rat	PMID:29438664|RGD:126925221
Biological Process	GO:0010243	response to organonitrogen compound	Ubd	IEP		Rat	PMID:12082013|RGD:2325987
Biological Process	GO:0034612	response to tumor necrosis factor	UBD	IEP		Human	PMID:17889673
Biological Process	GO:0034612	response to tumor necrosis factor	Ubd	IEP		Mouse	MGI:MGI:3640020|PMID:16782901
Biological Process	GO:0034341	response to type II interferon	UBD	IEP		Human	PMID:17889673
Biological Process	GO:0034341	response to type II interferon	Ubd	IEP		Mouse	MGI:MGI:3640020|PMID:16782901
Biological Process	GO:0006511	ubiquitin-dependent protein catabolic process	UBD	IDA		Human	PMID:17889673
Biological Process	GO:0006511	ubiquitin-dependent protein catabolic process	Ubd	IMP		Mouse	MGI:MGI:3813523|PMID:17889673
Biological Process	GO:0006511	ubiquitin-dependent protein catabolic process	Ubd	IMP		Mouse	MGI:MGI:4821085|PMID:11445583

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern