Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes UBP1
  • Mouse genes Ubp1
  • Rat genes Ubp1
  • Zfish genes ubp1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ubp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	UBP1	IDA		Human	PMID:8114710
Molecular Function	GO:0005515	protein binding	UBP1	IPI	UniProtKB:Q8TBB1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	UBP1	IPI	UniProtKB:Q9UBU8-2	Human	PMID:32296183
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	UBP1	IDA		Human	PMID:10644752
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	UBP1	IDA		Human	PMID:8114710
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	UBP1	IDA		Human	PMID:28473536
Cellular Component	GO:0005829	cytosol	UBP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	UBP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	UBP1	IDA		Human	PMID:8114710
Biological Process	GO:0001525	angiogenesis	Ubp1	IMP	MGI:MGI:3052819	Mouse	PMID:15282311
Biological Process	GO:0032897	negative regulation of viral transcription	UBP1	IDA		Human	PMID:8114710
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	UBP1	IDA		Human	PMID:8114710
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	UBP1	IDA		Human	PMID:10644752

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern