Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes UBTF
  • Mouse genes Ubtf
  • Rat genes Ubtf
  • Zfish genes ubtf,ubtfl
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ubtf

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	UBTF	IDA		Human	PMID:26089203
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:P21675	Human	PMID:12498690
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:P19338	Human	PMID:16777843
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q7Z2E3	Human	PMID:16777843
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q13950	Human	PMID:17251981
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q01105	Human	PMID:17318177
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q9NRC8	Human	PMID:19174463
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:P05554	Human	PMID:20075868
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q13950	Human	PMID:20160071
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:P01106	Human	PMID:20195357
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q9UPP1	Human	PMID:20208542
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:P01106	Human	PMID:21150319
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q80VY9	Human	PMID:21930779
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q6NS38	Human	PMID:23972994
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q96FC9	Human	PMID:26089203
Molecular Function	GO:0005515	protein binding	UBTF	IPI	UniProtKB:Q9NZM5	Human	PMID:27729611
Molecular Function	GO:0005515	protein binding	Ubtf	IPI	UniProtKB:Q6IMB1	Mouse	MGI:MGI:4441017|PMID:20168301
Molecular Function	GO:0005515	protein binding	Ubtf	IPI	UniProtKB:Q08775	Mouse	MGI:MGI:3698914|PMID:17251981
Molecular Function	GO:0005515	protein binding	Ubtf	IPI	UniProtKB:Q91YE4	Mouse	PMID:11592397
Molecular Function	GO:0005515	protein binding	Ubtf	IPI	PR:O09106	Mouse	PMID:19796622
Molecular Function	GO:0005515	protein binding	Ubtf	IPI	UniProtKB:Q9Z2J9	Rat	PMID:17251981|RGD:13432326
Molecular Function	GO:0003723	RNA binding	UBTF	HDA		Human	PMID:22681889
Molecular Function	GO:0001165	RNA polymerase I cis-regulatory region sequence-specific DNA binding	UBTF	IDA		Human	PMID:22368283
Molecular Function	GO:0001164	RNA polymerase I core promoter sequence-specific DNA binding	UBTF	IDA		Human	PMID:22368283
Molecular Function	GO:0001181	RNA polymerase I general transcription initiation factor activity	UBTF	IDA		Human	PMID:12498690
Molecular Function	GO:0097110	scaffold protein binding	UBTF	IPI	UniProtKB:Q9H8X2	Human	PMID:23203802
Cellular Component	GO:0001650	fibrillar center	UBTF	IDA		Human	GO_REF:0000052
Cellular Component	GO:0001650	fibrillar center	Ubtf	IDA		Rat	PMID:17587596|RGD:2301351
Cellular Component	GO:0005730	nucleolus	UBTF	IDA		Human	PMID:12498690
Cellular Component	GO:0005730	nucleolus	UBTF	IDA		Human	PMID:22368283
Cellular Component	GO:0005730	nucleolus	Ubtf	IDA		Mouse	MGI:MGI:4441017|PMID:20168301
Cellular Component	GO:0005730	nucleolus	Ubtf	IDA		Mouse	PMID:14729462
Cellular Component	GO:0005730	nucleolus	Ubtf	IDA		Mouse	PMID:15989966
Cellular Component	GO:0005730	nucleolus	Ubtf	IDA		Mouse	PMID:12878164
Cellular Component	GO:0005730	nucleolus	Ubtf	IDA		Mouse	PMID:20168299
Cellular Component	GO:0005730	nucleolus	Ubtf	IDA		Mouse	PMID:11555636
Cellular Component	GO:0005730	nucleolus	Ubtf	IDA		Mouse	PMID:16129783
Cellular Component	GO:0005634	nucleus	UBTF	IDA		Human	PMID:22368283
Cellular Component	GO:0005634	nucleus	Ubtf	IDA		Rat	PMID:15942958|RGD:1598733
Biological Process	GO:1990830	cellular response to leukemia inhibitory factor	Ubtf	IEP		Mouse	PMID:20439489
Biological Process	GO:0045943	positive regulation of transcription by RNA polymerase I	Ubtf	IDA		Mouse	MGI:MGI:4441017|PMID:20168301
Biological Process	GO:0006360	transcription by RNA polymerase I	UBTF	IMP		Human	PMID:28777933
Biological Process	GO:0006362	transcription elongation by RNA polymerase I	Ubtf	IDA		Mouse	PMID:23562818
Biological Process	GO:0006361	transcription initiation at RNA polymerase I promoter	UBTF	IDA		Human	PMID:12498690

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern