Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes UPF2
  • Mouse genes Upf2
  • Rat genes Upf2
  • Zfish genes upf2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Upf2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0060090	molecular adaptor activity	UPF2	EXP		Human	PMID:19556969
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:11163187
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9BZI7	Human	PMID:11163187
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9H1J1	Human	PMID:11163187
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q96Q15	Human	PMID:11544179
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:12417715
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9H1J1	Human	PMID:14636577
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9BZI7	Human	PMID:15231747
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:15680326
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:16086026
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900-2	Human	PMID:16452507
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q96Q15	Human	PMID:16452507
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9BZI7	Human	PMID:16452507
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:16488880
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9BZI7	Human	PMID:16601204
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:P60228	Human	PMID:17468741
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:17468741
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:17469741
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900-2	Human	PMID:18066079
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9BZI7-2	Human	PMID:18066079
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:18256688
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q96Q15	Human	PMID:18256688
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:19150429
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:19417104
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900-2	Human	PMID:19417104
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q96Q15	Human	PMID:19417104
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:19478851
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:19503078
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9BZI7	Human	PMID:19503078
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9H1J1	Human	PMID:19503078
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:19556969
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q96Q15	Human	PMID:20371770
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9BZI7-2	Human	PMID:20479275
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9H1J1	Human	PMID:20479275
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q86US8	Human	PMID:20930030
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900-2	Human	PMID:21145460
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9BZI7-2	Human	PMID:22522823
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:P17844	Human	PMID:23788676
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q92900	Human	PMID:25220460
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9UHX1	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	UPF2	IPI	UniProtKB:Q9BZI7	Human	PMID:26496610
Molecular Function	GO:0042162	telomeric DNA binding	UPF2	IDA		Human	PMID:17916692
Cellular Component	GO:0005737	cytoplasm	UPF2	IDA		Human	PMID:14636577
Cellular Component	GO:0036464	cytoplasmic ribonucleoprotein granule	UPF2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	UPF2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0035145	exon-exon junction complex	UPF2	IDA		Human	PMID:16601204
Cellular Component	GO:0005634	nucleus	UPF2	IDA		Human	PMID:14636577
Cellular Component	GO:0005634	nucleus	UPF2	IDA		Human	PMID:21829167
Biological Process	GO:0031100	animal organ regeneration	Upf2	IMP	MGI:MGI:3790198	Mouse	PMID:20657840
Biological Process	GO:0043009	chordate embryonic development	upf2	IMP	ZFIN:ZDB-MRPHLNO-090715-1	Zfish	PMID:19414594
Biological Process	GO:0001889	liver development	Upf2	IMP	MGI:MGI:3790198	Mouse	PMID:20657840
Biological Process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	UPF2	IMP		Human	PMID:18369367

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern