Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes USE1
  • Mouse genes Use1
  • Rat genes Use1
  • Zfish genes use1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Use1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:O43264	Human	PMID:15029241
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:P54920	Human	PMID:15029241
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q6NUQ1	Human	PMID:15029241
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q9P2W9	Human	PMID:15029241
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q12981	Human	PMID:15272311
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q9P2W9	Human	PMID:19369418
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:P14373	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:P50222	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q9P2W9	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:A2RRP1	Human	PMID:29929043
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:J3KQ12	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q12846	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q13520	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q15125	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q16623	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q5SR56	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q6NSX1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q8N5M9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q8N661	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q9BQE5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q9BXU9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q9NUG4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	USE1	IPI	UniProtKB:Q9NY72	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Use1	IPI	RGD:736978	Rat	PMID:18834646|RGD:11553268
Cellular Component	GO:0030137	COPI-coated vesicle	Use1	IDA		Rat	PMID:18834646|RGD:11553268
Cellular Component	GO:0005783	endoplasmic reticulum	USE1	IDA		Human	PMID:15029241
Cellular Component	GO:0005783	endoplasmic reticulum	Use1	IDA		Rat	PMID:18834646|RGD:11553268
Cellular Component	GO:0005794	Golgi apparatus	Use1	IDA		Rat	PMID:18834646|RGD:11553268
Cellular Component	GO:0005886	plasma membrane	Use1	IDA		Rat	PMID:18834646|RGD:11553268
Cellular Component	GO:0031201	SNARE complex	Use1	IDA		Rat	PMID:18834646|RGD:11553268
Biological Process	GO:0007029	endoplasmic reticulum organization	Use1	IMP	MGI:MGI:2176173,MGI:MGI:3842569	Mouse	PMID:19188447
Biological Process	GO:0071786	endoplasmic reticulum tubular network organization	Use1	IMP	MGI:MGI:3842571	Mouse	PMID:19188447
Biological Process	GO:0071786	endoplasmic reticulum tubular network organization	Use1	IMP	MGI:MGI:3842569	Mouse	PMID:19188447
Biological Process	GO:0060628	regulation of ER to Golgi vesicle-mediated transport	Use1	IMP	MGI:MGI:3842571	Mouse	PMID:19188447
Biological Process	GO:0060628	regulation of ER to Golgi vesicle-mediated transport	Use1	IMP	MGI:MGI:3842569	Mouse	PMID:19188447

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern