Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes VAMP4
  • Mouse genes Vamp4
  • Rat genes Vamp4
  • Zfish genes vamp4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Vamp4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q12846	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:O43752	Human	PMID:19557002
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q12846	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q8N6L0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:O43752	Human	PMID:25419848
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q5SQN1	Human	PMID:26359495
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:O94812	Human	PMID:28626000
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:A8MZ59	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:O14662-5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:O14684	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:O14880	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:P00387	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:P27105	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:P34910-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q12846	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q13520	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q15125	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q16623	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q3KNW5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q3SXY8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q5JX71	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q5T700	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q68DC2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q6UW68	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q7Z7G2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q86VR2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q8N5K1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q8N9I0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q8TDT2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q8TED1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q8WWF3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q96DZ7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q96KR6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q9BY50	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q9GZR5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q9GZY8-5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q9H2K0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q9H6H4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q9NR31	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q9NW97	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q9Y282	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	VAMP4	IPI	UniProtKB:Q9Y320	Human	PMID:32296183
Cellular Component	GO:0009986	cell surface	VAMP4	IDA		Human	PMID:21151919
Cellular Component	GO:0005794	Golgi apparatus	VAMP4	IDA		Human	PMID:23677696
Cellular Component	GO:0005794	Golgi apparatus	Vamp4	IDA		Mouse	PMID:18321981
Cellular Component	GO:0045335	phagocytic vesicle	Vamp4	IDA		Mouse	PMID:19144319
Cellular Component	GO:0098954	presynaptic endosome membrane	Vamp4	IDA		Mouse	PMID:22406549
Cellular Component	GO:0031201	SNARE complex	Vamp4	IDA		Mouse	PMID:19620288
Cellular Component	GO:0005802	trans-Golgi network	Vamp4	IDA		Mouse	PMID:12682051
Biological Process	GO:0071346	cellular response to type II interferon	Vamp4	IDA		Mouse	PMID:19144319
Biological Process	GO:0032456	endocytic recycling	VAMP4	IMP		Human	PMID:23677696
Biological Process	GO:0043001	Golgi to plasma membrane protein transport	Vamp4	IMP		Mouse	PMID:20582536
Biological Process	GO:0042996	regulation of Golgi to plasma membrane protein transport	Vamp4	IMP		Mouse	PMID:18227281
Biological Process	GO:1900242	regulation of synaptic vesicle endocytosis	Vamp4	EXP		Rat	PMID:26607000|RGD:11058152
Biological Process	GO:1900242	regulation of synaptic vesicle endocytosis	Vamp4	IDA		Rat	PMID:26607000|RGD:11058152
Biological Process	GO:1900242	regulation of synaptic vesicle endocytosis	Vamp4	IMP		Rat	PMID:26607000|RGD:11058152
Biological Process	GO:0035493	SNARE complex assembly	VAMP4	IDA		Human	PMID:21151919
Biological Process	GO:0016189	synaptic vesicle to endosome fusion	Vamp4	IDA		Rat	PMID:17004320|RGD:12050136
Biological Process	GO:0016189	synaptic vesicle to endosome fusion	Vamp4	IMP		Rat	PMID:17004320|RGD:12050136
Biological Process	GO:0016189	synaptic vesicle to endosome fusion	Vamp4	IDA		Rat	PMID:26607000|RGD:11058152
Biological Process	GO:0016189	synaptic vesicle to endosome fusion	Vamp4	IEP		Rat	PMID:26607000|RGD:11058152
Biological Process	GO:0016189	synaptic vesicle to endosome fusion	Vamp4	IMP		Rat	PMID:26607000|RGD:11058152
Biological Process	GO:1901998	toxin transport	Vamp4	IMP		Mouse	PMID:23716698

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern