Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes VANGL1
  • Mouse genes Vangl1
  • Rat genes Vangl1
  • Zfish genes vangl1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Vangl1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	VANGL1	IPI	UniProtKB:P27701	Human	PMID:15205336
Molecular Function	GO:0005515	protein binding	VANGL1	IPI	UniProtKB:O43889-2	Human	PMID:25910212
Molecular Function	GO:0005515	protein binding	VANGL1	IPI	UniProtKB:P26045	Human	PMID:27880917
Molecular Function	GO:0005515	protein binding	VANGL1	IPI	UniProtKB:P26045	Human	PMID:28330616
Molecular Function	GO:0005515	protein binding	Vangl1	IPI	UniProtKB:P31016	Mouse	MGI:MGI:5492230|PMID:23567299
Molecular Function	GO:0005515	protein binding	Vangl1	IPI	PR:Q60838	Mouse	PMID:15456783
Molecular Function	GO:0005515	protein binding	Vangl1	IPI	PR:P51141	Mouse	PMID:15456783
Molecular Function	GO:0005515	protein binding	Vangl1	IPI	PR:Q61062	Mouse	PMID:15456783
Cellular Component	GO:0016328	lateral plasma membrane	Vangl1	IDA		Mouse	PMID:22935613
Biological Process	GO:0043473	pigmentation	Vangl1	IMP	MGI:MGI:4365105	Mouse	PMID:25340873

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern