Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes VCPIP1
  • Mouse genes Vcpip1
  • Rat genes Vcpip1
  • Zfish genes vcpip1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Vcpip1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0004843	cysteine-type deubiquitinase activity	VCPIP1	IDA		Human	PMID:23827681
Molecular Function	GO:0004843	cysteine-type deubiquitinase activity	VCPIP1	IDA		Human	PMID:32649882
Molecular Function	GO:0004843	cysteine-type deubiquitinase activity	Vcpip1	IDA		Rat	PMID:15037600|RGD:1302353
Cellular Component	GO:0005737	cytoplasm	VCPIP1	IDA		Human	GO_REF:0000054
Cellular Component	GO:0005634	nucleus	VCPIP1	IDA		Human	PMID:32649882
Cellular Component	GO:0045202	synapse	Vcpip1	EXP		Mouse	PMID:16452087
Cellular Component	GO:0045202	synapse	Vcpip1	IDA		Mouse	PMID:16452087
Biological Process	GO:1904888	cranial skeletal system development	vcpip1	IMP	ZFIN:ZDB-MRPHLNO-100225-23	Zfish	PMID:28450118
Biological Process	GO:0006974	DNA damage response	VCPIP1	IDA		Human	PMID:32649882
Biological Process	GO:0016320	endoplasmic reticulum membrane fusion	Vcpip1	IDA		Rat	PMID:12473691|RGD:1299500
Biological Process	GO:0007030	Golgi organization	Vcpip1	IMP		Rat	PMID:12473691|RGD:1299500
Biological Process	GO:0090168	Golgi reassembly	Vcpip1	IDA		Rat	PMID:15037600|RGD:1302353
Biological Process	GO:0000278	mitotic cell cycle	Vcpip1	IMP		Rat	PMID:12473691|RGD:1299500
Biological Process	GO:0016579	protein deubiquitination	VCPIP1	IDA		Human	PMID:32649882
Biological Process	GO:0035871	protein K11-linked deubiquitination	VCPIP1	IDA		Human	PMID:23827681
Biological Process	GO:0071108	protein K48-linked deubiquitination	VCPIP1	IDA		Human	PMID:23827681
Biological Process	GO:0016567	protein ubiquitination	Vcpip1	IDA		Rat	PMID:15037600|RGD:1302353
Biological Process	GO:0106300	protein-DNA covalent cross-linking repair	VCPIP1	IDA		Human	PMID:32649882
Biological Process	GO:1905634	regulation of protein localization to chromatin	VCPIP1	IDA		Human	PMID:32649882

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern