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Comparative GO Graph (mouse, human, rat, zebrafish)
Source
Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Ybx1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

Molecular Function


Cellular Component


Biological Process



Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ybx1
Category ID Classification term Gene Evidence Inferred from Organism Reference
Molecular FunctionGO:0062153C5-methylcytidine-containing RNA bindingYBX1IDAHumanPMID:31358969
Molecular FunctionGO:0062153C5-methylcytidine-containing RNA bindingybx1IDAZfishPMID:31399345|ZFIN:ZDB-PUB-190811-3
Molecular FunctionGO:0003682chromatin bindingYbx1IDAMousePMID:24788519
Molecular FunctionGO:0008190eukaryotic initiation factor 4E bindingybx1IDAZfishPMID:24040511
Molecular FunctionGO:0051020GTPase bindingYBX1IPIUniProtKB:P32455HumanPMID:24337748
Molecular FunctionGO:0008327methyl-CpG bindingybx1IDAZfishPMID:31399345
Molecular FunctionGO:0035198miRNA bindingYBX1IDAHumanPMID:27559612
Molecular FunctionGO:0003729mRNA bindingYbx1IDAMouseMGI:MGI:6158172|PMID:29712925
Molecular FunctionGO:0003729mRNA bindingYbx1IPIRGD:2729RatPMID:16508950|RGD:1580626
Molecular FunctionGO:0002039p53 bindingYbx1IMPRatPMID:16158057|RGD:1580629
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q14103-4HumanPMID:12674497
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q08705HumanPMID:15229244
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q13616HumanPMID:16797541
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q7Z6M2HumanPMID:16797541
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q9NZI8HumanPMID:17289661
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:O15355HumanPMID:17572683
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q9UKV8HumanPMID:17932509
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q9UL18HumanPMID:17932509
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q9NR56HumanPMID:18335541
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:P27695HumanPMID:18809583
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q7Z6E9HumanPMID:18851979
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q99697HumanPMID:19174163
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q99697-2HumanPMID:19174163
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q09472HumanPMID:20856196
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q13616HumanPMID:21145461
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q07021HumanPMID:21653829
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q08211HumanPMID:21849455
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q07021HumanPMID:22118625
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:P62310HumanPMID:22365833
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:P62310HumanPMID:23986595
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q07021HumanPMID:23986595
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q08211HumanPMID:23986595
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:P19712:PRO_0000038050HumanPMID:24965446
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q7Z6M2HumanPMID:24981860
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q07021HumanPMID:25497084
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:P51858-1HumanPMID:26845719
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:P13693HumanPMID:27607350
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q15717HumanPMID:31358969
Molecular FunctionGO:0005515protein bindingYBX1IPIUniProtKB:Q13148HumanPMID:32814053
Molecular FunctionGO:0005515protein bindingYbx1IPIUniProtKB:P35922MouseMGI:MGI:5767075|PMID:11162447
Molecular FunctionGO:0005515protein bindingYbx1IPIUniProtKB:Q64321MouseMGI:MGI:5912851|PMID:28784777
Molecular FunctionGO:0005515protein bindingYbx1IPIPR:Q61937MousePMID:15596447
Molecular FunctionGO:0005515protein bindingYbx1IPIUniProtKB:Q9ERF6MousePMID:20004191
Molecular FunctionGO:0005515protein bindingYbx1IPIPR:Q61990MousePMID:8871564
Molecular FunctionGO:0005515protein bindingYbx1IPIRGD:628780RatPMID:23159318|RGD:10040996
Molecular FunctionGO:0005515protein bindingybx1IPIUniProtKB:F1QB54ZfishPMID:31399345|ZFIN:ZDB-PUB-190811-3
Molecular FunctionGO:0005515protein bindingybx1IPIZFIN:ZDB-GENE-030723-5ZfishPMID:30135188
Molecular FunctionGO:0005515protein bindingybx1IPIZFIN:ZDB-GENE-030131-3238ZfishPMID:31399345
Molecular FunctionGO:0003723RNA bindingYBX1IDAHumanPMID:19561594
Molecular FunctionGO:0003723RNA bindingYBX1HDAHumanPMID:22658674
Molecular FunctionGO:0003723RNA bindingYBX1HDAHumanPMID:22681889
Molecular FunctionGO:0003723RNA bindingYBX1IDAHumanPMID:28341602
Molecular FunctionGO:0003723RNA bindingYbx1IDARatPMID:23159318|RGD:10040996
Molecular FunctionGO:0003723RNA bindingybx1IPIZFIN:ZDB-GENE-990630-11ZfishPMID:29059375
Molecular FunctionGO:0003723RNA bindingybx1IPIZFIN:ZDB-GENE-990630-10ZfishPMID:29059375
Molecular FunctionGO:0003723RNA bindingybx1IPIZFIN:ZDB-GENE-990415-256ZfishPMID:24040511
Molecular FunctionGO:0043565sequence-specific DNA bindingYbx1IDARatPMID:16278212|RGD:1580627
Molecular FunctionGO:1990837sequence-specific double-stranded DNA bindingYBX1IDAHumanPMID:28473536
Molecular FunctionGO:0003697single-stranded DNA bindingYbx1IDAMousePMID:15282343
Molecular FunctionGO:0003697single-stranded DNA bindingYbx1IDARatPMID:17893273|RGD:2311253
Cellular ComponentGO:0070937CRD-mediated mRNA stability complexYBX1IPIHumanPMID:19029303
Cellular ComponentGO:0070937CRD-mediated mRNA stability complexYBX1IDAHumanPMID:19029303
Cellular ComponentGO:0005737cytoplasmYBX1IDAHumanPMID:24965446
Cellular ComponentGO:0005737cytoplasmYbx1IDAMousePMID:20004191
Cellular ComponentGO:0005737cytoplasmYbx1IDARatPMID:15615704|RGD:1580631
Cellular ComponentGO:0010494cytoplasmic stress granuleYBX1IDAHumanPMID:18335541
Cellular ComponentGO:0005829cytosolYBX1IDAHumanGO_REF:0000052
Cellular ComponentGO:0005829cytosolYBX1IDAHumanPMID:19029303
Cellular ComponentGO:0030425dendriteYbx1IDARatPMID:14559349|RGD:1580632
Cellular ComponentGO:0005783endoplasmic reticulumYBX1IDAHumanGO_REF:0000052
Cellular ComponentGO:0070062extracellular exosomeYBX1HDAHumanPMID:20458337
Cellular ComponentGO:0070062extracellular exosomeYBX1IDAHumanPMID:27559612
Cellular ComponentGO:0070062extracellular exosomeYBX1IDAHumanPMID:28341602
Cellular ComponentGO:0071204histone pre-mRNA 3'end processing complexYbx1IDAMouseMGI:MGI:4353869|PMID:19470752
Cellular ComponentGO:0043231intracellular membrane-bounded organelleYBX1IDAHumanGO_REF:0000052
Cellular ComponentGO:1990124messenger ribonucleoprotein complexYbx1IDARatPMID:20596529|RGD:10043155
Cellular ComponentGO:0043025neuronal cell bodyYbx1IDARatPMID:14559349|RGD:1580632
Cellular ComponentGO:0005634nucleusYbx1IGIMGI:MGI:97168MousePMID:20004191
Cellular ComponentGO:0005634nucleusYbx1IDARatPMID:16002047|RGD:1580630
Cellular ComponentGO:0005634nucleusybx1IDAZfishPMID:28008157
Cellular ComponentGO:0000932P-bodyybx1IDAZfishPMID:30135188
Cellular ComponentGO:0048471perinuclear region of cytoplasmYbx1IDARatPMID:16002047|RGD:1580630
Cellular ComponentGO:0005886plasma membraneYBX1IDAHumanGO_REF:0000052
Cellular ComponentGO:1990904ribonucleoprotein complexYBX1IDAHumanPMID:17289661
Cellular ComponentGO:0045202synapseYbx1EXPMousePMID:25211037
Cellular ComponentGO:0045202synapseYbx1IDAMousePMID:25211037
Cellular ComponentGO:0005689U12-type spliceosomal complexYBX1IDAHumanPMID:15146077
Biological ProcessGO:0098761cellular response to interleukin-7Ybx1IDAMousePMID:29581031
Biological ProcessGO:0043009chordate embryonic developmentybx1IMPZFIN:ZDB-GENO-190702-2ZfishPMID:30135188
Biological ProcessGO:0070934CRD-mediated mRNA stabilizationYBX1IDAHumanPMID:19029303
Biological ProcessGO:0070934CRD-mediated mRNA stabilizationYBX1IMPHumanPMID:19029303
Biological ProcessGO:0007343egg activationybx1IMPZFIN:ZDB-GENO-190702-2ZfishPMID:30135188
Biological ProcessGO:0048598embryonic morphogenesisybx1IMPZfishPMID:30135188|ZFIN:ZDB-PUB-180824-2
Biological ProcessGO:0048598embryonic morphogenesisybx1IMPZfishPMID:31399345|ZFIN:ZDB-PUB-190811-3
Biological ProcessGO:0008544epidermis developmentYbx1IMPMouseMGI:MGI:6158172|PMID:29712925
Biological ProcessGO:0051236establishment of RNA localizationybx1IMPZFIN:ZDB-GENO-140326-11ZfishPMID:24040511
Biological ProcessGO:0001701in utero embryonic developmentYbx1IGIMGI:MGI:2137670MousePMID:16954378
Biological ProcessGO:0001701in utero embryonic developmentYbx1IMPMGI:MGI:3581780MousePMID:16954378
Biological ProcessGO:1990428miRNA transportYBX1IDAHumanPMID:27559612
Biological ProcessGO:0048255mRNA stabilizationYBX1IDAHumanPMID:31358969
Biological ProcessGO:0048255mRNA stabilizationybx1IMPZfishPMID:31399345|ZFIN:ZDB-PUB-190811-3
Biological ProcessGO:0043066negative regulation of apoptotic processYbx1IDARatPMID:16158057|RGD:1580629
Biological ProcessGO:2000773negative regulation of cellular senescenceYbx1IMPMouseMGI:MGI:6158172|PMID:29712925
Biological ProcessGO:0046627negative regulation of insulin receptor signaling pathwayYbx1IMPRatPMID:12554649|RGD:727501
Biological ProcessGO:1900364negative regulation of mRNA polyadenylationybx1IMPZFIN:ZDB-GENO-140326-11ZfishPMID:24040511
Biological ProcessGO:0050686negative regulation of mRNA processingybx1IMPZFIN:ZDB-GENO-140326-11ZfishPMID:24040511
Biological ProcessGO:0048025negative regulation of mRNA splicing, via spliceosomeybx1IMPZFIN:ZDB-GENO-140326-11ZfishPMID:24040511
Biological ProcessGO:1900152negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decayYBX1IDAHumanPMID:19029303
Biological ProcessGO:0051154negative regulation of striated muscle cell differentiationYbx1IDAMousePMID:20004191
Biological ProcessGO:0000122negative regulation of transcription by RNA polymerase IIYbx1IDAMousePMID:20004191
Biological ProcessGO:0000122negative regulation of transcription by RNA polymerase IIYbx1IGIMGI:MGI:97168MousePMID:20004191
Biological ProcessGO:0000122negative regulation of transcription by RNA polymerase IIYbx1IDARatPMID:12835324|RGD:1580634
Biological ProcessGO:0017148negative regulation of translationybx1IMPZfishPMID:30135188|ZFIN:ZDB-PUB-180824-2
Biological ProcessGO:0017148negative regulation of translationybx1IMPZFIN:ZDB-GENO-190702-2ZfishPMID:30135188
Biological ProcessGO:0017148negative regulation of translationybx1IMPZFIN:ZDB-GENO-190702-4ZfishPMID:30135188
Biological ProcessGO:0045947negative regulation of translational initiationybx1IMPZFIN:ZDB-GENO-140326-11ZfishPMID:24040511
Biological ProcessGO:0045947negative regulation of translational initiationybx1IMPZFIN:ZDB-GENO-140326-11ZfishPMID:29059375
Biological ProcessGO:0001556oocyte maturationybx1IMPZFIN:ZDB-GENO-190702-4ZfishPMID:30135188
Biological ProcessGO:0008284positive regulation of cell population proliferationYbx1IMPRatPMID:15615704|RGD:1580631
Biological ProcessGO:2000767positive regulation of cytoplasmic translationYBX1IDAHumanPMID:19029303
Biological ProcessGO:0045944positive regulation of transcription by RNA polymerase IIYBX1IDAHumanPMID:18809583
Biological ProcessGO:0045944positive regulation of transcription by RNA polymerase IIYbx1IMPRatPMID:15615704|RGD:1580631
Biological ProcessGO:1903608protein localization to cytoplasmic stress granuleYBX1IMPHumanPMID:24965446
Biological ProcessGO:0006355regulation of DNA-templated transcriptionYBX1IDAHumanPMID:18809583
Biological ProcessGO:0050658RNA transportYBX1IMPHumanPMID:29073095
Biological ProcessGO:0051031tRNA transportYBX1IMPHumanPMID:29073095

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment
  IDA Inferred from direct assay
  IEP Inferred from expression pattern
  IGI Inferred from genetic interaction
  IMP Inferred from mutant phenotype
  IPI Inferred from physical interaction
  HTP Inferred from High Throughput Experiment
  HDA Inferred from High Throughput Direct Assay
  HMP Inferred from High Throughput Mutant Phenotype
  HGI Inferred from High Throughput Genetic Interaction
  HEP Inferred from High Throughput Expression Pattern

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory