Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Ybx1

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes YBX1
- Mouse genes Ybx1
- Rat genes Ybx1,Ybx1-ps20
- Zfish genes ybx1
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ybx1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0062153	C5-methylcytidine-containing RNA binding	YBX1	IDA		Human	PMID:31358969
Molecular Function	GO:0062153	C5-methylcytidine-containing RNA binding	ybx1	IDA		Zfish	PMID:31399345\|ZFIN:ZDB-PUB-190811-3
Molecular Function	GO:0003682	chromatin binding	Ybx1	IDA		Mouse	PMID:24788519
Molecular Function	GO:0008190	eukaryotic initiation factor 4E binding	ybx1	IDA		Zfish	PMID:24040511
Molecular Function	GO:0051020	GTPase binding	YBX1	IPI	UniProtKB:P32455	Human	PMID:24337748
Molecular Function	GO:0008327	methyl-CpG binding	ybx1	IDA		Zfish	PMID:31399345
Molecular Function	GO:0035198	miRNA binding	YBX1	IDA		Human	PMID:27559612
Molecular Function	GO:0003729	mRNA binding	Ybx1	IDA		Mouse	MGI:MGI:6158172\|PMID:29712925
Molecular Function	GO:0003729	mRNA binding	Ybx1	IPI	RGD:2729	Rat	PMID:16508950\|RGD:1580626
Molecular Function	GO:0002039	p53 binding	Ybx1	IMP		Rat	PMID:16158057\|RGD:1580629
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q14103-4	Human	PMID:12674497
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q08705	Human	PMID:15229244
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q13616	Human	PMID:16797541
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q7Z6M2	Human	PMID:16797541
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q9NZI8	Human	PMID:17289661
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:O15355	Human	PMID:17572683
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q9UKV8	Human	PMID:17932509
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q9UL18	Human	PMID:17932509
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q9NR56	Human	PMID:18335541
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:P27695	Human	PMID:18809583
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q7Z6E9	Human	PMID:18851979
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q99697	Human	PMID:19174163
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q99697-2	Human	PMID:19174163
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q09472	Human	PMID:20856196
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q13616	Human	PMID:21145461
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q07021	Human	PMID:21653829
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q08211	Human	PMID:21849455
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q07021	Human	PMID:22118625
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:P62310	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:P62310	Human	PMID:23986595
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q07021	Human	PMID:23986595
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q08211	Human	PMID:23986595
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:P19712:PRO_0000038050	Human	PMID:24965446
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q7Z6M2	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q07021	Human	PMID:25497084
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:P51858-1	Human	PMID:26845719
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:P13693	Human	PMID:27607350
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q15717	Human	PMID:31358969
Molecular Function	GO:0005515	protein binding	YBX1	IPI	UniProtKB:Q13148	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Ybx1	IPI	UniProtKB:P35922	Mouse	MGI:MGI:5767075\|PMID:11162447
Molecular Function	GO:0005515	protein binding	Ybx1	IPI	UniProtKB:Q64321	Mouse	MGI:MGI:5912851\|PMID:28784777
Molecular Function	GO:0005515	protein binding	Ybx1	IPI	PR:Q61937	Mouse	PMID:15596447
Molecular Function	GO:0005515	protein binding	Ybx1	IPI	UniProtKB:Q9ERF6	Mouse	PMID:20004191
Molecular Function	GO:0005515	protein binding	Ybx1	IPI	PR:Q61990	Mouse	PMID:8871564
Molecular Function	GO:0005515	protein binding	Ybx1	IPI	RGD:628780	Rat	PMID:23159318\|RGD:10040996
Molecular Function	GO:0005515	protein binding	ybx1	IPI	UniProtKB:F1QB54	Zfish	PMID:31399345\|ZFIN:ZDB-PUB-190811-3
Molecular Function	GO:0005515	protein binding	ybx1	IPI	ZFIN:ZDB-GENE-030723-5	Zfish	PMID:30135188
Molecular Function	GO:0005515	protein binding	ybx1	IPI	ZFIN:ZDB-GENE-030131-3238	Zfish	PMID:31399345
Molecular Function	GO:0003723	RNA binding	YBX1	IDA		Human	PMID:19561594
Molecular Function	GO:0003723	RNA binding	YBX1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	YBX1	HDA		Human	PMID:22681889
Molecular Function	GO:0003723	RNA binding	YBX1	IDA		Human	PMID:28341602
Molecular Function	GO:0003723	RNA binding	Ybx1	IDA		Rat	PMID:23159318\|RGD:10040996
Molecular Function	GO:0003723	RNA binding	ybx1	IPI	ZFIN:ZDB-GENE-990630-11	Zfish	PMID:29059375
Molecular Function	GO:0003723	RNA binding	ybx1	IPI	ZFIN:ZDB-GENE-990630-10	Zfish	PMID:29059375
Molecular Function	GO:0003723	RNA binding	ybx1	IPI	ZFIN:ZDB-GENE-990415-256	Zfish	PMID:24040511
Molecular Function	GO:0043565	sequence-specific DNA binding	Ybx1	IDA		Rat	PMID:16278212\|RGD:1580627
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	YBX1	IDA		Human	PMID:28473536
Molecular Function	GO:0003697	single-stranded DNA binding	Ybx1	IDA		Mouse	PMID:15282343
Molecular Function	GO:0003697	single-stranded DNA binding	Ybx1	IDA		Rat	PMID:17893273\|RGD:2311253
Cellular Component	GO:0070937	CRD-mediated mRNA stability complex	YBX1	IPI		Human	PMID:19029303
Cellular Component	GO:0070937	CRD-mediated mRNA stability complex	YBX1	IDA		Human	PMID:19029303
Cellular Component	GO:0005737	cytoplasm	YBX1	IDA		Human	PMID:24965446
Cellular Component	GO:0005737	cytoplasm	Ybx1	IDA		Mouse	PMID:20004191
Cellular Component	GO:0005737	cytoplasm	Ybx1	IDA		Rat	PMID:15615704\|RGD:1580631
Cellular Component	GO:0010494	cytoplasmic stress granule	YBX1	IDA		Human	PMID:18335541
Cellular Component	GO:0005829	cytosol	YBX1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	YBX1	IDA		Human	PMID:19029303
Cellular Component	GO:0030425	dendrite	Ybx1	IDA		Rat	PMID:14559349\|RGD:1580632
Cellular Component	GO:0005783	endoplasmic reticulum	YBX1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0070062	extracellular exosome	YBX1	HDA		Human	PMID:20458337
Cellular Component	GO:0070062	extracellular exosome	YBX1	IDA		Human	PMID:27559612
Cellular Component	GO:0070062	extracellular exosome	YBX1	IDA		Human	PMID:28341602
Cellular Component	GO:0071204	histone pre-mRNA 3'end processing complex	Ybx1	IDA		Mouse	MGI:MGI:4353869\|PMID:19470752
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	YBX1	IDA		Human	GO_REF:0000052
Cellular Component	GO:1990124	messenger ribonucleoprotein complex	Ybx1	IDA		Rat	PMID:20596529\|RGD:10043155
Cellular Component	GO:0043025	neuronal cell body	Ybx1	IDA		Rat	PMID:14559349\|RGD:1580632
Cellular Component	GO:0005634	nucleus	Ybx1	IGI	MGI:MGI:97168	Mouse	PMID:20004191
Cellular Component	GO:0005634	nucleus	Ybx1	IDA		Rat	PMID:16002047\|RGD:1580630
Cellular Component	GO:0005634	nucleus	ybx1	IDA		Zfish	PMID:28008157
Cellular Component	GO:0000932	P-body	ybx1	IDA		Zfish	PMID:30135188
Cellular Component	GO:0048471	perinuclear region of cytoplasm	Ybx1	IDA		Rat	PMID:16002047\|RGD:1580630
Cellular Component	GO:0005886	plasma membrane	YBX1	IDA		Human	GO_REF:0000052
Cellular Component	GO:1990904	ribonucleoprotein complex	YBX1	IDA		Human	PMID:17289661
Cellular Component	GO:0045202	synapse	Ybx1	EXP		Mouse	PMID:25211037
Cellular Component	GO:0045202	synapse	Ybx1	IDA		Mouse	PMID:25211037
Cellular Component	GO:0005689	U12-type spliceosomal complex	YBX1	IDA		Human	PMID:15146077
Biological Process	GO:0098761	cellular response to interleukin-7	Ybx1	IDA		Mouse	PMID:29581031
Biological Process	GO:0043009	chordate embryonic development	ybx1	IMP	ZFIN:ZDB-GENO-190702-2	Zfish	PMID:30135188
Biological Process	GO:0070934	CRD-mediated mRNA stabilization	YBX1	IDA		Human	PMID:19029303
Biological Process	GO:0070934	CRD-mediated mRNA stabilization	YBX1	IMP		Human	PMID:19029303
Biological Process	GO:0007343	egg activation	ybx1	IMP	ZFIN:ZDB-GENO-190702-2	Zfish	PMID:30135188
Biological Process	GO:0048598	embryonic morphogenesis	ybx1	IMP		Zfish	PMID:30135188\|ZFIN:ZDB-PUB-180824-2
Biological Process	GO:0048598	embryonic morphogenesis	ybx1	IMP		Zfish	PMID:31399345\|ZFIN:ZDB-PUB-190811-3
Biological Process	GO:0008544	epidermis development	Ybx1	IMP		Mouse	MGI:MGI:6158172\|PMID:29712925
Biological Process	GO:0051236	establishment of RNA localization	ybx1	IMP	ZFIN:ZDB-GENO-140326-11	Zfish	PMID:24040511
Biological Process	GO:0001701	in utero embryonic development	Ybx1	IGI	MGI:MGI:2137670	Mouse	PMID:16954378
Biological Process	GO:0001701	in utero embryonic development	Ybx1	IMP	MGI:MGI:3581780	Mouse	PMID:16954378
Biological Process	GO:1990428	miRNA transport	YBX1	IDA		Human	PMID:27559612
Biological Process	GO:0048255	mRNA stabilization	YBX1	IDA		Human	PMID:31358969
Biological Process	GO:0048255	mRNA stabilization	ybx1	IMP		Zfish	PMID:31399345\|ZFIN:ZDB-PUB-190811-3
Biological Process	GO:0043066	negative regulation of apoptotic process	Ybx1	IDA		Rat	PMID:16158057\|RGD:1580629
Biological Process	GO:2000773	negative regulation of cellular senescence	Ybx1	IMP		Mouse	MGI:MGI:6158172\|PMID:29712925
Biological Process	GO:0046627	negative regulation of insulin receptor signaling pathway	Ybx1	IMP		Rat	PMID:12554649\|RGD:727501
Biological Process	GO:1900364	negative regulation of mRNA polyadenylation	ybx1	IMP	ZFIN:ZDB-GENO-140326-11	Zfish	PMID:24040511
Biological Process	GO:0050686	negative regulation of mRNA processing	ybx1	IMP	ZFIN:ZDB-GENO-140326-11	Zfish	PMID:24040511
Biological Process	GO:0048025	negative regulation of mRNA splicing, via spliceosome	ybx1	IMP	ZFIN:ZDB-GENO-140326-11	Zfish	PMID:24040511
Biological Process	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	YBX1	IDA		Human	PMID:19029303
Biological Process	GO:0051154	negative regulation of striated muscle cell differentiation	Ybx1	IDA		Mouse	PMID:20004191
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Ybx1	IDA		Mouse	PMID:20004191
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Ybx1	IGI	MGI:MGI:97168	Mouse	PMID:20004191
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Ybx1	IDA		Rat	PMID:12835324\|RGD:1580634
Biological Process	GO:0017148	negative regulation of translation	ybx1	IMP		Zfish	PMID:30135188\|ZFIN:ZDB-PUB-180824-2
Biological Process	GO:0017148	negative regulation of translation	ybx1	IMP	ZFIN:ZDB-GENO-190702-2	Zfish	PMID:30135188
Biological Process	GO:0017148	negative regulation of translation	ybx1	IMP	ZFIN:ZDB-GENO-190702-4	Zfish	PMID:30135188
Biological Process	GO:0045947	negative regulation of translational initiation	ybx1	IMP	ZFIN:ZDB-GENO-140326-11	Zfish	PMID:24040511
Biological Process	GO:0045947	negative regulation of translational initiation	ybx1	IMP	ZFIN:ZDB-GENO-140326-11	Zfish	PMID:29059375
Biological Process	GO:0001556	oocyte maturation	ybx1	IMP	ZFIN:ZDB-GENO-190702-4	Zfish	PMID:30135188
Biological Process	GO:0008284	positive regulation of cell population proliferation	Ybx1	IMP		Rat	PMID:15615704\|RGD:1580631
Biological Process	GO:2000767	positive regulation of cytoplasmic translation	YBX1	IDA		Human	PMID:19029303
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	YBX1	IDA		Human	PMID:18809583
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Ybx1	IMP		Rat	PMID:15615704\|RGD:1580631
Biological Process	GO:1903608	protein localization to cytoplasmic stress granule	YBX1	IMP		Human	PMID:24965446
Biological Process	GO:0006355	regulation of DNA-templated transcription	YBX1	IDA		Human	PMID:18809583
Biological Process	GO:0050658	RNA transport	YBX1	IMP		Human	PMID:29073095
Biological Process	GO:0051031	tRNA transport	YBX1	IMP		Human	PMID:29073095

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 10/29/2024 MGI 6.24

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.