Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes YBX3
  • Mouse genes Ybx3
  • Rat genes Ybx3
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ybx3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Ybx3	IDA		Mouse	PMID:12433987
Molecular Function	GO:0003730	mRNA 3'-UTR binding	Ybx3	IDA		Mouse	PMID:10772793
Molecular Function	GO:1905538	polysome binding	Ybx3	IDA		Mouse	PMID:12117816
Molecular Function	GO:0005515	protein binding	YBX3	IPI	UniProtKB:P62136	Human	PMID:25593058
Molecular Function	GO:0005515	protein binding	Ybx3	IPI	PR:Q91YK2	Mouse	PMID:19710015
Molecular Function	GO:0043021	ribonucleoprotein complex binding	Ybx3	IDA		Mouse	PMID:10772793
Molecular Function	GO:0003723	RNA binding	YBX3	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	YBX3	HDA		Human	PMID:22681889
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Ybx3	IDA		Mouse	MGI:MGI:5574302|PMID:17934523
Molecular Function	GO:0003697	single-stranded DNA binding	Ybx3	IDA		Rat	PMID:8029009|RGD:632638
Cellular Component	GO:0005737	cytoplasm	Ybx3	IDA		Mouse	PMID:10772793
Cellular Component	GO:0005829	cytosol	YBX3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005921	gap junction	Ybx3	IDA		Rat	PMID:16650609|RGD:8553398
Cellular Component	GO:0005634	nucleus	Ybx3	IDA		Mouse	PMID:12433987
Cellular Component	GO:0005634	nucleus	Ybx3	IDA		Rat	PMID:8029009|RGD:632638
Cellular Component	GO:0045202	synapse	Ybx3	IDA		Mouse	PMID:25211037
Cellular Component	GO:0045202	synapse	Ybx3	EXP		Mouse	PMID:25211037
Biological Process	GO:0031100	animal organ regeneration	Ybx3	IEP		Rat	PMID:8029009|RGD:632638
Biological Process	GO:0006915	apoptotic process	Ybx3	IMP	MGI:MGI:3693011	Mouse	PMID:16954378
Biological Process	GO:0071474	cellular hyperosmotic response	YBX3	IMP		Human	PMID:22711822
Biological Process	GO:0071356	cellular response to tumor necrosis factor	YBX3	IMP		Human	PMID:22711822
Biological Process	GO:0035234	ectopic germ cell programmed cell death	Ybx3	IMP	MGI:MGI:3693011	Mouse	PMID:16954378
Biological Process	GO:0009566	fertilization	Ybx3	IMP	MGI:MGI:3693011	Mouse	PMID:16954378
Biological Process	GO:0001701	in utero embryonic development	Ybx3	IGI	MGI:MGI:99146	Mouse	PMID:16954378
Biological Process	GO:0008584	male gonad development	Ybx3	IMP	MGI:MGI:3693011	Mouse	PMID:16954378
Biological Process	GO:0043066	negative regulation of apoptotic process	Ybx3	IMP	MGI:MGI:3693011	Mouse	PMID:16954378
Biological Process	GO:0051093	negative regulation of developmental process	Ybx3	IMP	MGI:MGI:3693011	Mouse	PMID:16954378
Biological Process	GO:1902219	negative regulation of intrinsic apoptotic signaling pathway in response to osmotic stress	YBX3	IMP		Human	PMID:22711822
Biological Process	GO:0060546	negative regulation of necroptotic process	YBX3	IMP		Human	PMID:22711822
Biological Process	GO:2000242	negative regulation of reproductive process	Ybx3	IMP	MGI:MGI:3693011	Mouse	PMID:16954378
Biological Process	GO:0048642	negative regulation of skeletal muscle tissue development	Ybx3	IDA		Mouse	PMID:18676817
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Ybx3	IDA		Mouse	MGI:MGI:5574302|PMID:17934523
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Ybx3	IMP		Rat	PMID:8029009|RGD:632638
Biological Process	GO:0046622	positive regulation of organ growth	Ybx3	IMP	MGI:MGI:3693011	Mouse	PMID:16954378
Biological Process	GO:0007283	spermatogenesis	Ybx3	IMP	MGI:MGI:3693011	Mouse	PMID:16954378
Biological Process	GO:0007283	spermatogenesis	Ybx3	IEP		Rat	PMID:11675468|RGD:2311251

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern