Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes YLPM1
  • Mouse genes Ylpm1
  • Rat genes Ylpm1
  • Zfish genes ylpm1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ylpm1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	Ylpm1	IDA		Mouse	PMID:15511642
Molecular Function	GO:0005515	protein binding	YLPM1	IPI	UniProtKB:Q93009	Human	PMID:19615732
Molecular Function	GO:0005515	protein binding	YLPM1	IPI	UniProtKB:O00555	Human	PMID:21078624
Molecular Function	GO:0005515	protein binding	YLPM1	IPI	UniProtKB:P62136	Human	PMID:22321011
Molecular Function	GO:0005515	protein binding	YLPM1	IPI	UniProtKB:P62136	Human	PMID:28330616
Molecular Function	GO:0005515	protein binding	YLPM1	IPI	UniProtKB:Q93009	Human	PMID:35044719
Molecular Function	GO:0005515	protein binding	YLPM1	IPI	UniProtKB:Q99816	Human	PMID:35044719
Molecular Function	GO:0005515	protein binding	Ylpm1	IPI	UniProtKB:P62138	Rat	PMID:17890166|RGD:8553503
Molecular Function	GO:0003723	RNA binding	YLPM1	HDA		Human	PMID:22681889
Cellular Component	GO:0005829	cytosol	YLPM1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	YLPM1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	YLPM1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	YLPM1	IDA		Human	PMID:17890166
Cellular Component	GO:0005634	nucleus	Ylpm1	IDA		Mouse	PMID:11555636
Cellular Component	GO:0005634	nucleus	Ylpm1	IDA		Mouse	PMID:15511642
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Ylpm1	IDA		Mouse	PMID:15511642
Biological Process	GO:0032204	regulation of telomere maintenance	Ylpm1	IDA		Mouse	PMID:15100092

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern