Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes YRDC
  • Mouse genes Yrdc
  • Rat genes Yrdc
  • Zfish genes yrdc
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Yrdc

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0061710	L-threonylcarbamoyladenylate synthase	YRDC	IDA		Human	PMID:29760464
Molecular Function	GO:0005515	protein binding	YRDC	IPI	UniProtKB:O14645	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	YRDC	IPI	UniProtKB:O14901	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	YRDC	IPI	UniProtKB:P46379-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	YRDC	IPI	UniProtKB:Q9BVL2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Yrdc	IPI	PR:Q9ER99	Mouse	PMID:16024787
Cellular Component	GO:0005737	cytoplasm	YRDC	IDA		Human	PMID:29760464
Cellular Component	GO:0016020	membrane	Yrdc	IDA		Mouse	PMID:2675563
Cellular Component	GO:0005739	mitochondrion	YRDC	IDA		Human	PMID:29760464
Biological Process	GO:0051051	negative regulation of transport	YRDC	IDA		Human	PMID:2675563
Biological Process	GO:0002949	tRNA threonylcarbamoyladenosine modification	YRDC	IDA		Human	PMID:29760464
Biological Process	GO:0002949	tRNA threonylcarbamoyladenosine modification	YRDC	IDA		Human	PMID:31481669
Biological Process	GO:0002949	tRNA threonylcarbamoyladenosine modification	YRDC	IDA		Human	PMID:34545459

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern