Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes ZBED4
  • Mouse genes Zbed4
  • Rat genes Zbed4
  • Zfish genes zbed4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Zbed4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	Zbed4	IDA		Mouse	MGI:MGI:6234760|PMID:22693546
Molecular Function	GO:0042802	identical protein binding	ZBED4	IPI	UniProtKB:O75132	Human	PMID:17209048
Molecular Function	GO:0005515	protein binding	ZBED4	IPI	UniProtKB:P35579	Human	PMID:22693546
Molecular Function	GO:0005515	protein binding	ZBED4	IPI	UniProtKB:Q15424	Human	PMID:22693546
Molecular Function	GO:0005515	protein binding	ZBED4	IPI	UniProtKB:P50222	Human	PMID:25416956
Molecular Function	GO:0003723	RNA binding	Zbed4	IDA		Mouse	MGI:MGI:6234760|PMID:22693546
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Zbed4	IDA		Mouse	MGI:MGI:6234760|PMID:22693546
Molecular Function	GO:0000976	transcription cis-regulatory region binding	Zbed4	IDA		Mouse	MGI:MGI:6234760|PMID:22693546
Cellular Component	GO:0005737	cytoplasm	ZBED4	IDA		Human	PMID:19369242
Cellular Component	GO:0005737	cytoplasm	ZBED4	IDA		Human	PMID:22693546
Cellular Component	GO:0005737	cytoplasm	Zbed4	IDA		Mouse	PMID:21850176
Cellular Component	GO:0005654	nucleoplasm	ZBED4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	ZBED4	IDA		Human	PMID:17209048
Cellular Component	GO:0005634	nucleus	ZBED4	IDA		Human	PMID:19369242
Cellular Component	GO:0005634	nucleus	ZBED4	IDA		Human	PMID:22693546
Cellular Component	GO:0005634	nucleus	Zbed4	IDA		Mouse	MGI:MGI:4397541|PMID:19369242
Cellular Component	GO:0005634	nucleus	Zbed4	IDA		Mouse	PMID:21850176
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Zbed4	IDA		Mouse	MGI:MGI:6234760|PMID:22693546

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern