Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	SLC6A12	HGNC:11045 (HGNC) 6539 (Entrez Gene) 603080 (OMIM) SLC6A12 (Alliance of Genome Resources)	Chr12 p13.33	Chr12:183848-214570 (-) GRCh38		P48065 (UniProt | EBI) NM_003044 (RefSeq)
mouse	Slc6a12	MGI:95628 (MGI) 14411 (Entrez Gene) Gene Tree Slc6a12 (Alliance of Genome Resources)	Chr6 57.25 cM	Chr6:121320035-121342734 (+) GRCm39		ENSMUSG00000030109 (Ensembl Gene Model) ENSMUSP00000032200 (Ensembl) ENSMUST00000032200 (Ensembl)
rat	Slc6a12	RGD:620255 (Rat Genome Database) 50676 (Entrez Gene) Slc6a12 (Alliance of Genome Resources)	Chr4 q42			P48056 (UniProt | EBI) NM_017335 (RefSeq)
zebrafish	si:ch211-132b12.1	ZDB-GENE-050420-315 (Zebrafish Model Organism Database) 100034467 (Entrez Gene) si:ch211-132b12.1 (Alliance of Genome Resources)	Chr18			NP_001076533 (RefSeq) NM_001083064 (RefSeq)
	si:ch211-132b12.2	ZDB-GENE-050420-178 (Zebrafish Model Organism Database) 571877 (Entrez Gene) si:ch211-132b12.2 (Alliance of Genome Resources)	Chr18			NP_001038688 (RefSeq) NM_001045223 (RefSeq)
	si:ch211-132b12.3	ZDB-GENE-050419-161 (Zebrafish Model Organism Database) 100002232 (Entrez Gene) si:ch211-132b12.3 (Alliance of Genome Resources)	Chr18			NP_001076419 (RefSeq) NM_001082950 (RefSeq)
	si:ch211-132b12.6	ZDB-GENE-050420-179 (Zebrafish Model Organism Database) 564583 (Entrez Gene) si:ch211-132b12.6 (Alliance of Genome Resources)	Chr18			NP_001038523 (RefSeq) NM_001045058 (RefSeq)
	slc6a11a	ZDB-GENE-030131-3729 (Zebrafish Model Organism Database) 558960 (Entrez Gene) slc6a11a (Alliance of Genome Resources)	Chr6			NP_001091857 (RefSeq) NM_001098387 (RefSeq)
	slc6a22.1	ZDB-GENE-030616-629 (Zebrafish Model Organism Database) 368923 (Entrez Gene) slc6a22.1 (Alliance of Genome Resources)	Chr6			NP_001004533 (RefSeq) NM_001004533 (RefSeq)
	slc6a22.2	ZDB-GENE-030616-628 (Zebrafish Model Organism Database) 561024 (Entrez Gene) slc6a22.2 (Alliance of Genome Resources)	Chr6			NP_001116233 (RefSeq) NM_001122761 (RefSeq)
	zgc:158427	ZDB-GENE-061215-110 (Zebrafish Model Organism Database) 790932 (Entrez Gene) zgc:158427 (Alliance of Genome Resources)	Chr18			NP_001073546 (RefSeq) NM_001080077 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.