Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	SSX1	HGNC:11335 (HGNC) 6756 (Entrez Gene) 312820 (OMIM) SSX1 (Alliance of Genome Resources)	ChrX p11.23	ChrX:48255392-48267444 (+) GRCh38	spermatogenic failure	Q16384 (UniProt | EBI) NM_005635 (RefSeq)
	SSX2	HGNC:11336 (HGNC) 6757 (Entrez Gene) 300192 (OMIM) SSX2 (Alliance of Genome Resources)	ChrX p11.22	ChrX:52696896-52707227 (-) GRCh38	synovial sarcoma	Q16385 (UniProt | EBI) NM_001278697 (RefSeq)
	SSX2B	HGNC:22263 (HGNC) 727837 (Entrez Gene) SSX2B (Alliance of Genome Resources)	ChrX p11.22	ChrX:52751132-52790305 (+) GRCh38		Q16385 (UniProt | EBI) NM_001278702 (RefSeq)
	SSX4	HGNC:11338 (HGNC) 6759 (Entrez Gene) 300326 (OMIM) SSX4 (Alliance of Genome Resources)	ChrX p11.23			O60224 (UniProt | EBI) NM_005636 (RefSeq)
	SSX4B	HGNC:16880 (HGNC) 548313 (Entrez Gene) SSX4B (Alliance of Genome Resources)	ChrX p11.23			O60224 (UniProt | EBI) NM_001034832 (RefSeq)
	SSX5	HGNC:11339 (HGNC) 6758 (Entrez Gene) 300327 (OMIM) SSX5 (Alliance of Genome Resources)	ChrX p11.23	ChrX:48186220-48196795 (-) GRCh38		O60225 (UniProt | EBI) NM_021015 (RefSeq)
	SSX6P	HGNC:19652 (HGNC) 280657 (Entrez Gene) SSX6P (Alliance of Genome Resources)	ChrX p11.23	ChrX:48107982-48120686 (+) GRCh38		Q7RTT6 (UniProt | EBI) NM_173357 (RefSeq)
	SSX7	HGNC:19653 (HGNC) 280658 (Entrez Gene) 300542 (OMIM) SSX7 (Alliance of Genome Resources)	ChrX p11.22	ChrX:52644061-52654900 (-) GRCh38		Q7RTT5 (UniProt | EBI) NM_173358 (RefSeq)
	SSX8P	HGNC:19654 (HGNC) 280659 (Entrez Gene) SSX8P (Alliance of Genome Resources)	ChrX p11.22	ChrX:52622935-52633948 (+) GRCh38		Q7RTT4 (UniProt | EBI) NM_174961 (RefSeq)
	SSX9P	HGNC:19655 (HGNC) 280660 (Entrez Gene) SSX9P (Alliance of Genome Resources)	ChrX p11.23	ChrX:48296816-48306179 (-) GRCh38		Q7RTT3 (UniProt | EBI) NM_174962 (RefSeq)
mouse	Ssxb5	MGI:2446774 (MGI) 387586 (Entrez Gene) Gene Tree Ssxb5 (Alliance of Genome Resources)	ChrX 4.0 cM	ChrX:8669930-8675625 (+) GRCm39		ENSMUSG00000071816 (Ensembl Gene Model) ENSMUSP00000086787 (Ensembl) ENSMUST00000089370 (Ensembl)
rat	Ssx1	RGD:1593374 (Rat Genome Database) 691903 (Entrez Gene) Ssx1 (Alliance of Genome Resources)	ChrX q12			XP_038956500 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.