Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	HAPLN1	HGNC:2380 (HGNC) 1404 (Entrez Gene) 115435 (OMIM) HAPLN1 (Alliance of Genome Resources)	Chr5 q14.3	Chr5:83637805-83720855 (-) GRCh38		P10915 (UniProt | EBI) NM_001884 (RefSeq)
mouse	Hapln1	MGI:1337006 (MGI) 12950 (Entrez Gene) Gene Tree Hapln1 (Alliance of Genome Resources)	Chr13 45.5 cM	Chr13:89688654-89759951 (+) GRCm39	spondyloepiphyseal dysplasia congenita	12950 (NCBI Gene Model) Q9QUP5 (UniProt | EBI) NM_013500 (RefSeq)
rat	Hapln1	RGD:2412 (Rat Genome Database) 29331 (Entrez Gene) Hapln1 (Alliance of Genome Resources)	Chr2 q12			P03994 (UniProt | EBI) NM_019189 (RefSeq)
zebrafish	hapln1a	ZDB-GENE-050302-175 (Zebrafish Model Organism Database) 493635 (Entrez Gene) hapln1a (Alliance of Genome Resources)	Chr5			NP_001300659 (RefSeq) NM_001007790 (RefSeq)
	hapln1b	ZDB-GENE-050920-1 (Zebrafish Model Organism Database) 569074 (Entrez Gene) hapln1b (Alliance of Genome Resources)	Chr10			XP_002663704 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.