Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	PTPDC1	HGNC:30184 (HGNC) 138639 (Entrez Gene) PTPDC1 (Alliance of Genome Resources)	Chr9 q22.32	Chr9:94030794-94109856 (+) GRCh38		A2A3K4 (UniProt | EBI) NM_152422 (RefSeq)
mouse	Ptpdc1	MGI:2145430 (MGI) 218232 (Entrez Gene) Gene Tree Ptpdc1 (Alliance of Genome Resources)	Chr13 24.86 cM	Chr13:48731348-48779140 (-) GRCm39		ENSMUSG00000038042 (Ensembl Gene Model) ENSMUSP00000152771 (Ensembl) ENSMUST00000222028 (Ensembl)
rat	Ptpdc1	RGD:1307698 (Rat Genome Database) 291022 (Entrez Gene) Ptpdc1 (Alliance of Genome Resources)	Chr17 p14			NP_001099574 (RefSeq) NM_001106104 (RefSeq)
zebrafish	ptpdc1a	ZDB-GENE-070112-632 (Zebrafish Model Organism Database) 565773 (Entrez Gene) ptpdc1a (Alliance of Genome Resources)	Chr11			A1L1R5 (UniProt | EBI) NM_001080596 (RefSeq)
	ptpdc1b	ZDB-GENE-090312-138 (Zebrafish Model Organism Database) 570928 (Entrez Gene) ptpdc1b (Alliance of Genome Resources)	Chr23			XP_009294876 (RefSeq)
	zgc:77752	ZDB-GENE-040426-1867 (Zebrafish Model Organism Database) 393862 (Entrez Gene) zgc:77752 (Alliance of Genome Resources)	Chr18			NP_001315366 (RefSeq) NM_001328437 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.