Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	COL12A1	HGNC:2188 (HGNC) 1303 (Entrez Gene) 120320 (OMIM) COL12A1 (Alliance of Genome Resources)	Chr6 q13-q14.1	Chr6:75084326-75206267 (-) GRCh38	Bethlem myopathy Ullrich congenital muscular dystrophy 2	Q99715 (UniProt | EBI) NM_004370 (RefSeq)
mouse	Col12a1	MGI:88448 (MGI) 12816 (Entrez Gene) Gene Tree Col12a1 (Alliance of Genome Resources)	Chr9 43.82 cM	Chr9:79506273-79626113 (-) GRCm39		ENSMUSG00000032332 (Ensembl Gene Model) ENSMUSP00000071662 (Ensembl) ENSMUST00000071750 (Ensembl)
rat	Col12a1	RGD:2374 (Rat Genome Database) 25683 (Entrez Gene) Col12a1 (Alliance of Genome Resources)	Chr8 q31			P70560 (UniProt | EBI) NM_013142 (RefSeq)
zebrafish	col12a1a	ZDB-GENE-090728-1 (Zebrafish Model Organism Database) 100149543 (Entrez Gene) col12a1a (Alliance of Genome Resources)	Chr17			XP_002665305 (RefSeq)
	col12a1b	ZDB-GENE-120215-116 (Zebrafish Model Organism Database) 562946 (Entrez Gene) col12a1b (Alliance of Genome Resources)	Chr20			XP_017208133 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.