Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	HOXC6	HGNC:5128 (HGNC) 3223 (Entrez Gene) 142972 (OMIM) HOXC6 (Alliance of Genome Resources)	Chr12 q13.13	Chr12:53990624-54030823 (+) GRCh38		P09630 (UniProt | EBI) NM_153693 (RefSeq)
mouse	Hoxc6	MGI:96197 (MGI) 15425 (Entrez Gene) Gene Tree Hoxc6 (Alliance of Genome Resources)	Chr15 58.06 cM	Chr15:102906689-102920313 (+) GRCm39		ENSMUSG00000001661 (Ensembl Gene Model) ENSMUSP00000001711 (Ensembl) ENSMUST00000001711 (Ensembl)
rat	Hoxc6	RGD:620626 (Rat Genome Database) 252885 (Entrez Gene) Hoxc6 (Alliance of Genome Resources)	Chr7 q36			NP_001385447 (RefSeq) NM_001398518 (RefSeq)
zebrafish	hoxc6a	ZDB-GENE-990415-113 (Zebrafish Model Organism Database) 30346 (Entrez Gene) hoxc6a (Alliance of Genome Resources)	Chr23			P15862 (UniProt | EBI) NM_131123 (RefSeq)
	hoxc6b	ZDB-GENE-000822-1 (Zebrafish Model Organism Database) 58045 (Entrez Gene) hoxc6b (Alliance of Genome Resources)	Chr11			Q9PWM5 (UniProt | EBI) NM_001328159 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.