Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	HOXA1	HGNC:5099 (HGNC) 3198 (Entrez Gene) 142955 (OMIM) HOXA1 (Alliance of Genome Resources)	Chr7 p15.2	Chr7:27092993-27096000 (-) GRCh38	Athabaskan brainstem dysgenesis syndrome autistic disorder	P49639 (UniProt | EBI) NM_005522 (RefSeq)
mouse	Hoxa1	MGI:96170 (MGI) 15394 (Entrez Gene) Gene Tree Hoxa1 (Alliance of Genome Resources)	Chr6 25.4 cM	Chr6:52132573-52135299 (-) GRCm39	Athabaskan brainstem dysgenesis syndrome	15394 (NCBI Gene Model) P09022 (UniProt | EBI) NM_010449 (RefSeq)
rat	Hoxa1	RGD:11414885 (Rat Genome Database) 103690132 (Entrez Gene) Hoxa1 (Alliance of Genome Resources)	Chr4			O08656 (UniProt | EBI) NM_001309364 (RefSeq)
zebrafish	hoxa1a	ZDB-GENE-000823-5 (Zebrafish Model Organism Database) 58051 (Entrez Gene) hoxa1a (Alliance of Genome Resources)	Chr19			Q98SI1 (UniProt | EBI) NM_131536 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.