Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	OPN4	HGNC:14449 (HGNC) 94233 (Entrez Gene) 606665 (OMIM) OPN4 (Alliance of Genome Resources)	Chr10 q23.2	Chr10:86654518-86666460 (+) GRCh38		Q9UHM6 (UniProt | EBI) NM_033282 (RefSeq)
mouse	Opn4	MGI:1353425 (MGI) 30044 (Entrez Gene) Gene Tree Opn4 (Alliance of Genome Resources)	Chr14 20.83 cM	Chr14:34312575-34322099 (-) GRCm39		30044 (NCBI Gene Model) Q9QXZ9 (UniProt | EBI) NM_001128599 (RefSeq)
rat	Opn4	RGD:621701 (Rat Genome Database) 192223 (Entrez Gene) Opn4 (Alliance of Genome Resources)	Chr16 p15			Q8R456 (UniProt | EBI) NM_138860 (RefSeq)
zebrafish	opn4.1	ZDB-GENE-030314-2 (Zebrafish Model Organism Database) 352918 (Entrez Gene) opn4.1 (Alliance of Genome Resources)	Chr2			Q1JPS6 (UniProt | EBI) NM_178289 (RefSeq)
	opn4a	ZDB-GENE-070111-2 (Zebrafish Model Organism Database) 571624 (Entrez Gene) opn4a (Alliance of Genome Resources)	Chr13			Q2KNE5 (UniProt | EBI) NM_001128761 (RefSeq)
	opn4b	ZDB-GENE-080415-3 (Zebrafish Model Organism Database) 100884131 (Entrez Gene) opn4b (Alliance of Genome Resources)	Chr12			NP_001245153 (RefSeq) NM_001258224 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.