Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	TRIM5	HGNC:16276 (HGNC) 85363 (Entrez Gene) 608487 (OMIM) TRIM5 (Alliance of Genome Resources)	Chr11 p15.4	Chr11:5588635-5938619 (-) GRCh38		Q9C035 (UniProt | EBI) NM_033092 (RefSeq)
mouse	Trim12c	MGI:4821183 (MGI) 319236 (Entrez Gene) Gene Tree Trim12c (Alliance of Genome Resources)	Chr7 55.69 cM	Chr7:103987961-104002569 (-) GRCm39		ENSMUSG00000057143 (Ensembl Gene Model) ENSMUSP00000060100 (Ensembl) ENSMUST00000059037 (Ensembl)
rat	Trim5	RGD:1304579 (Rat Genome Database) 308906 (Entrez Gene) Trim5 (Alliance of Genome Resources)	Chr1 q32			NP_001014045 (RefSeq) NM_001014023 (RefSeq)
zebrafish	btr16	ZDB-GENE-060929-1066 (Zebrafish Model Organism Database) 767728 (Entrez Gene) btr16 (Alliance of Genome Resources)	Chr15			NP_001070134 (RefSeq) NM_001076666 (RefSeq)
	si:ch73-364h19.2	ZDB-GENE-131119-21 (Zebrafish Model Organism Database) 100537438 (Entrez Gene) si:ch73-364h19.2 (Alliance of Genome Resources)	ChrUN			XP_003198243 (RefSeq)
	si:ch211-114c12.5	ZDB-GENE-060526-13 (Zebrafish Model Organism Database) 565476 (Entrez Gene) si:ch211-114c12.5 (Alliance of Genome Resources)	Chr5			XP_021332022 (RefSeq)
	si:ch211-120g10.1	ZDB-GENE-130531-56 (Zebrafish Model Organism Database) 556805 (Entrez Gene) si:ch211-120g10.1 (Alliance of Genome Resources)	Chr3			XP_684799 (RefSeq)
	si:dkey-18p12.4	ZDB-GENE-070912-408 (Zebrafish Model Organism Database) 794946 (Entrez Gene) si:dkey-18p12.4 (Alliance of Genome Resources)	Chr9			NP_001116179 (RefSeq) NM_001122707 (RefSeq)
	si:dkey-219e21.2	ZDB-GENE-141215-26 (Zebrafish Model Organism Database) 797371 (Entrez Gene) si:dkey-219e21.2 (Alliance of Genome Resources)	Chr12			XP_001337843 (RefSeq)
	trim47	ZDB-GENE-040426-1000 (Zebrafish Model Organism Database) 393254 (Entrez Gene) trim47 (Alliance of Genome Resources)	Chr10			NP_956578 (RefSeq) NM_200284 (RefSeq)
	zgc:194990	ZDB-GENE-081022-171 (Zebrafish Model Organism Database) 568410 (Entrez Gene) zgc:194990 (Alliance of Genome Resources)	Chr8			NP_001124262 (RefSeq) NM_001130790 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.