Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	PTPN13	HGNC:9646 (HGNC) 5783 (Entrez Gene) 600267 (OMIM) PTPN13 (Alliance of Genome Resources)	Chr4 q21.3	Chr4:86594315-86815171 (+) GRCh38	breast cancer colon cancer colorectal cancer head and neck squamous cell carcinoma hepatocellular carcinoma lung adenocarcinoma lung squamous cell carcinoma	Q12923 (UniProt | EBI) NM_080683 (RefSeq)
mouse	Ptpn13	MGI:103293 (MGI) 19249 (Entrez Gene) Gene Tree Ptpn13 (Alliance of Genome Resources)	Chr5 50.43 cM	Chr5:103573058-103746169 (+) GRCm39		ENSMUSG00000034573 (Ensembl Gene Model) ENSMUSP00000048119 (Ensembl) ENSMUST00000048957 (Ensembl)
rat	Ptpn13	RGD:1563360 (Rat Genome Database) 498331 (Entrez Gene) Ptpn13 (Alliance of Genome Resources)	Chr14 p22			NP_001094259 (RefSeq) NM_001100789 (RefSeq)
zebrafish	ptpn13	ZDB-GENE-070410-72 (Zebrafish Model Organism Database) 560883 (Entrez Gene) ptpn13 (Alliance of Genome Resources)	Chr21			NP_001083012 (RefSeq) NM_001089543 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.