COL2A1 Vertebrate HGNC

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Vertebrate Homology

Source

Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
- human
- mouse
- rat
- zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/12/2024 MGI 6.24

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences select all deselect all Go
human	COL2A1	HGNC:2200 (HGNC) 1280 (Entrez Gene) 120140 (OMIM) COL2A1 (Alliance of Genome Resources)	Chr12 q13.11	Chr12:47972967-48006212 (-) GRCh38	achondrogenesis type II chondrosarcoma chorioretinitis cleft palate eye disease Kniest dysplasia Legg-Calve-Perthes disease multiple epiphyseal dysplasia with myopia and deafness myopia osteoarthritis osteochondrodysplasia osteonecrosis retinal detachment spondyloarthropathy spondyloepimetaphyseal dysplasia, Strudwick type spondyloepiphyseal dysplasia congenita spondyloepiphyseal dysplasia Stanescu type spondyloperipheral dysplasia Stickler syndrome Stickler syndrome 1 Torrance type platyspondylic dysplasia	P02458 (UniProt \| EBI) NM_001844 (RefSeq)
mouse	Col2a1	MGI:88452 (MGI) 12824 (Entrez Gene) Gene Tree Col2a1 (Alliance of Genome Resources)	Chr15 53.97 cM	Chr15:97873483-97902525 (-) GRCm39	achondrogenesis type II hypochondrogenesis spondyloepimetaphyseal dysplasia spondyloepiphyseal dysplasia congenita	12824 (NCBI Gene Model) P28481 (UniProt \| EBI) NR_177066 (RefSeq)
rat	Col2a1	RGD:2375 (Rat Genome Database) 25412 (Entrez Gene) Col2a1 (Alliance of Genome Resources)	Chr7 q36			P05539 (UniProt \| EBI) NM_012929 (RefSeq)
zebrafish	col2a1a	ZDB-GENE-980526-192 (Zebrafish Model Organism Database) 562496 (Entrez Gene) col2a1a (Alliance of Genome Resources)	Chr8			NP_571367 (RefSeq) NM_131292 (RefSeq)
zebrafish	col2a1b	ZDB-GENE-050302-9 (Zebrafish Model Organism Database) 503730 (Entrez Gene) col2a1b (Alliance of Genome Resources)	Chr11			NP_001268407 (RefSeq) NM_001281478 (RefSeq)