Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	IGKC	HGNC:5716 (HGNC) 3514 (Entrez Gene) 147200 (OMIM) IGKC (Alliance of Genome Resources)	Chr2 p11.2	Chr2:88857161-88857683 (-) GRCh38		P01834 (UniProt | EBI)
mouse	Igkc	MGI:96495 (MGI) 16071 (Entrez Gene) Gene Tree Igkc (Alliance of Genome Resources)	Chr6 32.04 cM	Chr6:70703419-70703738 (+) GRCm39		16071 (NCBI Gene Model) P01837 (UniProt | EBI) BC110685 (GenBank | ENA | DDBJ)
rat	Igkc	RGD:1562743 (Rat Genome Database) 500183 (Entrez Gene) Igkc (Alliance of Genome Resources)	Chr4 q31			P01836 (UniProt | EBI)
	Igkvl16	RGD:1561547 (Rat Genome Database) 500180 (Entrez Gene) Igkvl16 (Alliance of Genome Resources)	Chr4			P01835 (UniProt | EBI)
zebrafish	igic1s1	ZDB-GENE-051013-12 (Zebrafish Model Organism Database) 798043 (Entrez Gene) igic1s1 (Alliance of Genome Resources)	Chr24			XP_068073380 (RefSeq)
	igl3v5	ZDB-GENE-051013-3 (Zebrafish Model Organism Database) 100009618 (Entrez Gene) igl3v5 (Alliance of Genome Resources)	Chr24
	zgc:153659	ZDB-GENE-060825-311 (Zebrafish Model Organism Database) 751695 (Entrez Gene) zgc:153659 (Alliance of Genome Resources)	Chr24			NP_001038873 (RefSeq) NM_001045408 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.