Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	IGKV1-5	HGNC:5741 (HGNC) 28299 (Entrez Gene) IGKV1-5 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:88947301-88947957 (-) GRCh38		P01602 (UniProt | EBI)
	IGKV1-6	HGNC:5742 (HGNC) 28943 (Entrez Gene) IGKV1-6 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:88966262-88966767 (-) GRCh38		A0A0C4DH72 (UniProt | EBI)
	IGKV1-9	HGNC:5744 (HGNC) 28941 (Entrez Gene) IGKV1-9 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:89009982-89010515 (-) GRCh38		A0A0C4DH69 (UniProt | EBI)
	IGKV1-13	HGNC:5731 (HGNC) 28939 (Entrez Gene) IGKV1-13 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:89045990-89046466 (-) GRCh38		P0DP09 (UniProt | EBI)
	IGKV1-16	HGNC:5732 (HGNC) 28938 (Entrez Gene) IGKV1-16 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:89099859-89100361 (-) GRCh38		P04430 (UniProt | EBI)
	IGKV1-17	HGNC:5733 (HGNC) 28937 (Entrez Gene) IGKV1-17 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:89117342-89117844 (-) GRCh38		P01599 (UniProt | EBI)
	IGKV1-33	HGNC:5737 (HGNC) 28933 (Entrez Gene) IGKV1-33 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:89268001-89268506 (-) GRCh38
	IGKV1D-13	HGNC:5747 (HGNC) 28902 (Entrez Gene) IGKV1D-13 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:90154073-90154574 (+) GRCh38		A0A0B4J2D9 (UniProt | EBI)
	IGKV1D-17	HGNC:5749 (HGNC) 28900 (Entrez Gene) IGKV1D-17 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:90082635-90083291 (+) GRCh38		A0A075B6S4 (UniProt | EBI)
	IGKV1D-33	HGNC:5753 (HGNC) 28896 (Entrez Gene) IGKV1D-33 (Alliance of Genome Resources)	Chr2 p11.2	Chr2:89913982-89914545 (+) GRCh38		P01593 (UniProt | EBI)
	IGKV1OR2-108	HGNC:5767 (HGNC) 28862 (Entrez Gene) 147185 (OMIM) IGKV1OR2-108 (Alliance of Genome Resources)	Chr2 q12-q14	Chr2:113406396-113406872 (+) GRCh38
mouse	Igkv9-123	MGI:3643848 (MGI) 628144 (Entrez Gene) Gene Tree Igkv9-123 (Alliance of Genome Resources)	Chr6 31.02 cM	Chr6:67931214-67931674 (-) GRCm39		628144 (NCBI Gene Model) A0A140T8N8 (UniProt | EBI)
zebrafish	igl3v2	ZDB-GENE-060503-410 (Zebrafish Model Organism Database) 100534704 (Entrez Gene) igl3v2 (Alliance of Genome Resources)	Chr24
	igl4v8	ZDB-GENE-051013-6 (Zebrafish Model Organism Database) 101884895 (Entrez Gene) igl4v8 (Alliance of Genome Resources)	Chr25			XP_068073697 (RefSeq)
	igl4v9	ZDB-GENE-051013-8 (Zebrafish Model Organism Database) 619523 (Entrez Gene) igl4v9 (Alliance of Genome Resources)	Chr25
	igl4v10	ZDB-GENE-051013-5 (Zebrafish Model Organism Database) 619526 (Entrez Gene) igl4v10 (Alliance of Genome Resources)	Chr25

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.