Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	TRIM58	HGNC:24150 (HGNC) 25893 (Entrez Gene) 620527 (OMIM) TRIM58 (Alliance of Genome Resources)	Chr1 q44	Chr1:247857187-247880138 (+) GRCh38		Q8NG06 (UniProt | EBI) NM_015431 (RefSeq)
mouse	Trim58	MGI:2684862 (MGI) 216781 (Entrez Gene) Gene Tree Trim58 (Alliance of Genome Resources)	Chr11 36.23 cM	Chr11:58531291-58543230 (+) GRCm39		ENSMUSG00000037124 (Ensembl Gene Model) ENSMUSP00000074594 (Ensembl) ENSMUST00000075084 (Ensembl)
rat	Trim58	RGD:1566174 (Rat Genome Database) 303167 (Entrez Gene) Trim58 (Alliance of Genome Resources)	Chr10 q22			NP_001178570 (RefSeq) NM_001191641 (RefSeq)
zebrafish	btr04	ZDB-GENE-060825-109 (Zebrafish Model Organism Database) 565512 (Entrez Gene) btr04 (Alliance of Genome Resources)	Chr7			XP_017212468 (RefSeq) NM_001077168 (RefSeq)
	btr05	ZDB-GENE-080219-8 (Zebrafish Model Organism Database) 794264 (Entrez Gene) btr05 (Alliance of Genome Resources)	Chr7			NP_001373305 (RefSeq) NM_001386376 (RefSeq)
	btr06	ZDB-GENE-080516-2 (Zebrafish Model Organism Database) 100151764 (Entrez Gene) btr06 (Alliance of Genome Resources)	Chr7			NP_001120951 (RefSeq) NM_001127479 (RefSeq)
	btr07	ZDB-GENE-110921-1 (Zebrafish Model Organism Database) 793570 (Entrez Gene) btr07 (Alliance of Genome Resources)	Chr7			XP_017212469 (RefSeq)
	btr18	ZDB-GENE-080213-2 (Zebrafish Model Organism Database) 571162 (Entrez Gene) btr18 (Alliance of Genome Resources)	Chr19			NP_001107915 (RefSeq) NM_001423705 (RefSeq)
	btr20	ZDB-GENE-060421-3419 (Zebrafish Model Organism Database) 678596 (Entrez Gene) btr20 (Alliance of Genome Resources)	Chr19			NP_001410635 (RefSeq) NM_001423706 (RefSeq)
	btr21	ZDB-GENE-081031-80 (Zebrafish Model Organism Database) 100330973 (Entrez Gene) btr21 (Alliance of Genome Resources)	Chr19
	btr22	ZDB-GENE-080402-4 (Zebrafish Model Organism Database) 100144555 (Entrez Gene) btr22 (Alliance of Genome Resources)	Chr19			NP_001410830 (RefSeq) NM_001423901 (RefSeq)
	btr23	ZDB-GENE-070705-375 (Zebrafish Model Organism Database) 100334710 (Entrez Gene) btr23 (Alliance of Genome Resources)	Chr19			XP_009292260 (RefSeq)
	btr24	ZDB-GENE-070705-376 (Zebrafish Model Organism Database) 100000030 (Entrez Gene) btr24 (Alliance of Genome Resources)	Chr19			XP_017207881 (RefSeq) NM_001100067 (RefSeq)
	btr25	ZDB-GENE-070705-377 (Zebrafish Model Organism Database) 571141 (Entrez Gene) btr25 (Alliance of Genome Resources)	Chr19			NP_001373741 (RefSeq) NM_001100041 (RefSeq)
	btr26	ZDB-GENE-070705-378 (Zebrafish Model Organism Database) 100149795 (Entrez Gene) btr26 (Alliance of Genome Resources)	Chr19			XP_005173810 (RefSeq)
	btr29	ZDB-GENE-090512-2 (Zebrafish Model Organism Database) 797384 (Entrez Gene) btr29 (Alliance of Genome Resources)	Chr19			NP_001159606 (RefSeq) NM_001166134 (RefSeq)
	btr32	ZDB-GENE-060421-3827 (Zebrafish Model Organism Database) 678629 (Entrez Gene) btr32 (Alliance of Genome Resources)	Chr23			NP_001035464 (RefSeq) NM_001040374 (RefSeq)
	si:ch211-216p19.6	ZDB-GENE-160728-7 (Zebrafish Model Organism Database) 100006636 (Entrez Gene) si:ch211-216p19.6 (Alliance of Genome Resources)	Chr7			NP_001373742 (RefSeq) NM_001386813 (RefSeq)
	si:dkey-46i9.6	ZDB-GENE-160114-63 (Zebrafish Model Organism Database) 571944 (Entrez Gene) si:dkey-46i9.6 (Alliance of Genome Resources)	Chr7			XP_700683 (RefSeq)
	zgc:173581	ZDB-GENE-080212-7 (Zebrafish Model Organism Database) 100137104 (Entrez Gene) zgc:173581 (Alliance of Genome Resources)	Chr19			NP_001410659 (RefSeq) NM_001114701 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.