Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	H3C11	HGNC:4771 (HGNC) 8354 (Entrez Gene) 602814 (OMIM) H3C11 (Alliance of Genome Resources)	Chr6 p22.1	Chr6:27871845-27872346 (-) GRCh38		P68431 (UniProt | EBI) NM_003533 (RefSeq)
	H3C13	HGNC:25311 (HGNC) 653604 (Entrez Gene) H3C13 (Alliance of Genome Resources)	Chr1 q21.2	Chr1:149813225-149813693 (-) GRCh38		Q71DI3 (UniProt | EBI) NM_001123375 (RefSeq)
	H3C14	HGNC:20503 (HGNC) 126961 (Entrez Gene) 142780 (OMIM) H3C14 (Alliance of Genome Resources)	Chr1 q21.2			Q71DI3 (UniProt | EBI) NM_021059 (RefSeq)
	H3C15	HGNC:20505 (HGNC) 333932 (Entrez Gene) H3C15 (Alliance of Genome Resources)	Chr1 q21.2	Chr1:149852608-149853125 (+) GRCh38		Q71DI3 (UniProt | EBI) NM_001005464 (RefSeq)
mouse	H3c6	MGI:2448326 (MGI) 319151 (Entrez Gene) Gene Tree H3c6 (Alliance of Genome Resources)	Chr13 9.79 cM	Chr13:23745708-23746543 (-) GRCm39		ENSMUSG00000069273 (Ensembl Gene Model) ENSMUSP00000100739 (Ensembl) ENSMUST00000105107 (Ensembl)
rat	H3c13	RGD:1586732 (Rat Genome Database) 684762 (Entrez Gene) H3c13 (Alliance of Genome Resources)	Chr17			NP_001395612 (RefSeq) NM_001408683 (RefSeq)
	H3cl	RGD:7709329 (Rat Genome Database) 102549173 (Entrez Gene) H3cl (Alliance of Genome Resources)	Chr17
	H4cl1	RGD:7725170 (Rat Genome Database) 102548682 (Entrez Gene) H4cl1 (Alliance of Genome Resources)	Chr17			XP_017456208 (RefSeq)
	Hist2h3c2	RGD:1306445 (Rat Genome Database) 310678 (Entrez Gene) Hist2h3c2 (Alliance of Genome Resources)	Chr2 q34			NP_001101168 (RefSeq) NM_001107698 (RefSeq)
zebrafish	h3c13a	ZDB-GENE-050626-58 (Zebrafish Model Organism Database) 573992 (Entrez Gene) h3c13a (Alliance of Genome Resources)	Chr25			Q4QRF4 (UniProt | EBI) NM_001025171 (RefSeq)
	hist2h3c	ZDB-GENE-070424-8 (Zebrafish Model Organism Database) 570618 (Entrez Gene) hist2h3c (Alliance of Genome Resources)	Chr25			NP_001093643 (RefSeq) NM_001100173 (RefSeq)
	si:ch73-36p18.2	ZDB-GENE-131127-56 (Zebrafish Model Organism Database) 100334933 (Entrez Gene) si:ch73-36p18.2 (Alliance of Genome Resources)	Chr25			XP_002666951 (RefSeq)
	si:dkey-108k21.25	ZDB-GENE-131121-61 (Zebrafish Model Organism Database) 103909883 (Entrez Gene) si:dkey-108k21.25 (Alliance of Genome Resources)	Chr25			XP_009296462 (RefSeq)
	si:dkey-261m9.8	ZDB-GENE-131127-42 (Zebrafish Model Organism Database) 100329422 (Entrez Gene) si:dkey-261m9.8 (Alliance of Genome Resources)	Chr25			XP_017209710 (RefSeq)
	zgc:162611	ZDB-GENE-070410-87 (Zebrafish Model Organism Database) 100037365 (Entrez Gene) zgc:162611 (Alliance of Genome Resources)	Chr25			NP_001082986 (RefSeq) NM_001089517 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.