Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	LRRC38	HGNC:27005 (HGNC) 126755 (Entrez Gene) 615212 (OMIM) LRRC38 (Alliance of Genome Resources)	Chr1 p36.21	Chr1:13474973-13514003 (-) GRCh38		Q5VT99 (UniProt | EBI) NM_001010847 (RefSeq)
mouse	Lrrc38	MGI:2442845 (MGI) 242735 (Entrez Gene) Gene Tree Lrrc38 (Alliance of Genome Resources)	Chr4 77.55 cM	Chr4:143076327-143097602 (+) GRCm39		ENSMUSG00000028584 (Ensembl Gene Model) ENSMUSP00000053597 (Ensembl) ENSMUST00000052458 (Ensembl)
rat	Lrrc38	RGD:1311416 (Rat Genome Database) 313681 (Entrez Gene) Lrrc38 (Alliance of Genome Resources)	Chr5 q36			NP_001101461 (RefSeq) NM_001107991 (RefSeq)
zebrafish	lrrc38a	ZDB-GENE-080327-12 (Zebrafish Model Organism Database) 567935 (Entrez Gene) lrrc38a (Alliance of Genome Resources)	Chr23			XP_021325623 (RefSeq)
	lrrc38b	ZDB-GENE-141216-65 (Zebrafish Model Organism Database) 799882 (Entrez Gene) lrrc38b (Alliance of Genome Resources)	Chr11			XP_009304374 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.