Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	PRDM1	HGNC:9346 (HGNC) 639 (Entrez Gene) 603423 (OMIM) PRDM1 (Alliance of Genome Resources)	Chr6 q21	Chr6:105992690-106109939 (+) GRCh38	hepatocellular carcinoma lung adenocarcinoma	O75626 (UniProt | EBI) NM_001198 (RefSeq)
mouse	Prdm1	MGI:99655 (MGI) 12142 (Entrez Gene) Gene Tree Prdm1 (Alliance of Genome Resources)	Chr10 23.24 cM	Chr10:44313173-44404497 (-) GRCm39	systemic lupus erythematosus	ENSMUSG00000038151 (Ensembl Gene Model) ENSMUSP00000039248 (Ensembl) ENSMUST00000039174 (Ensembl)
rat	Prdm1	RGD:1311765 (Rat Genome Database) 309871 (Entrez Gene) Prdm1 (Alliance of Genome Resources)	Chr20 q13			NP_001101109 (RefSeq) NM_001107639 (RefSeq)
zebrafish	prdm1a	ZDB-GENE-030131-2193 (Zebrafish Model Organism Database) 323473 (Entrez Gene) prdm1a (Alliance of Genome Resources)	Chr16			NP_955809 (RefSeq) NM_199515 (RefSeq)
	prdm1b	ZDB-GENE-080618-2 (Zebrafish Model Organism Database) 110437762 (Entrez Gene) prdm1b (Alliance of Genome Resources)	Chr19			XP_021323870 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.