Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	PRPF40A	HGNC:16463 (HGNC) 55660 (Entrez Gene) 612941 (OMIM) PRPF40A (Alliance of Genome Resources)	Chr2 q23.3	Chr2:152651593-152718019 (-) GRCh38		O75400 (UniProt | EBI) NM_001395483 (RefSeq)
mouse	Prpf40a	MGI:1860512 (MGI) 56194 (Entrez Gene) Gene Tree Prpf40a (Alliance of Genome Resources)	Chr2 30.69 cM	Chr2:53024714-53081450 (-) GRCm39		56194 (NCBI Gene Model) Q9R1C7 (UniProt | EBI) NM_001371015 (RefSeq)
rat	Prpf40a	RGD:1311401 (Rat Genome Database) 295607 (Entrez Gene) Prpf40a (Alliance of Genome Resources)	Chr3 q12			NP_001099950 (RefSeq) NM_001106480 (RefSeq)
zebrafish	prpf40a	ZDB-GENE-030131-274 (Zebrafish Model Organism Database) 321555 (Entrez Gene) prpf40a (Alliance of Genome Resources)	Chr9			NP_938170 (RefSeq) NM_198356 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.