Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

 

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	IGHV4-4	HGNC:5652 (HGNC) 28401 (Entrez Gene) IGHV4-4 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106011922-106012420 (-) GRCh38		A0A075B6R2 (UniProt | EBI)
	IGHV4-28	HGNC:5645 (HGNC) 28400 (Entrez Gene) IGHV4-28 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106324254-106324760 (-) GRCh38		A0A0C4DH34 (UniProt | EBI)
	IGHV4-30-2	HGNC:5647 (HGNC) 28398 (Entrez Gene) IGHV4-30-2 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106349283-106349720 (-) GRCh38
	IGHV4-30-4	HGNC:5648 (HGNC) 28397 (Entrez Gene) IGHV4-30-4 (Alliance of Genome Resources)	Chr14 q32.33			P0DP06 (UniProt | EBI)
	IGHV4-31	HGNC:5649 (HGNC) 28396 (Entrez Gene) IGHV4-31 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106349283-106349792 (-) GRCh38		P0DP07 (UniProt | EBI)
	IGHV4-34	HGNC:5650 (HGNC) 28395 (Entrez Gene) IGHV4-34 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106373661-106374145 (-) GRCh38		P06331 (UniProt | EBI)
	IGHV4-38-2	HGNC:5657 (HGNC) 28389 (Entrez Gene) IGHV4-38-2 (Alliance of Genome Resources)	Chr14 q32.33			P0DP08 (UniProt | EBI)
	IGHV4-39	HGNC:5651 (HGNC) 28394 (Entrez Gene) IGHV4-39 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106421709-106422218 (-) GRCh38		P01824 (UniProt | EBI)
	IGHV4-59	HGNC:5654 (HGNC) 28392 (Entrez Gene) IGHV4-59 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106627249-106627825 (-) GRCh38		P01825 (UniProt | EBI)
	IGHV4-61	HGNC:5655 (HGNC) 28391 (Entrez Gene) IGHV4-61 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106639119-106639657 (-) GRCh38		A0A0C4DH41 (UniProt | EBI)
	IGHV4OR15-8	HGNC:5658 (HGNC) 28317 (Entrez Gene) IGHV4OR15-8 (Alliance of Genome Resources)	Chr15 q11.2	Chr15:22184967-22185402 (-) GRCh38
	IGHV6-1	HGNC:5662 (HGNC) 28385 (Entrez Gene) IGHV6-1 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:105939754-105940253 (-) GRCh38		A0A0B4J1U7 (UniProt | EBI)
mouse	Ighv3-6	MGI:4439856 (MGI) 780829 (Entrez Gene) Gene Tree Ighv3-6 (Alliance of Genome Resources)	Chr12 62.34 cM	Chr12:114251772-114252067 (-) GRCm39		780829 (NCBI Gene Model) P18531 (UniProt | EBI) X03378 (GenBank | ENA | DDBJ)
rat	Ighl7	RGD:2320341 (Rat Genome Database) 100361324 (Entrez Gene) Ighl7 (Alliance of Genome Resources)	Chr6
zebrafish	ighv4-3	ZDB-GENE-040514-9 (Zebrafish Model Organism Database) 561498 (Entrez Gene) ighv4-3 (Alliance of Genome Resources)	Chr3
	ighv5-2	ZDB-GENE-040514-16 (Zebrafish Model Organism Database) 777697 (Entrez Gene) ighv5-2 (Alliance of Genome Resources)	Chr3
	ighv5-4	ZDB-GENE-040514-18 (Zebrafish Model Organism Database) 554307 (Entrez Gene) ighv5-4 (Alliance of Genome Resources)	Chr3
	ighv5-5	ZDB-GENE-040514-19 (Zebrafish Model Organism Database) 554308 (Entrez Gene) ighv5-5 (Alliance of Genome Resources)	Chr3
	ighv5-8	ZDB-GENE-040514-22 (Zebrafish Model Organism Database) 777761 (Entrez Gene) ighv5-8 (Alliance of Genome Resources)	Chr3
	ighv8-2	ZDB-GENE-040514-27 (Zebrafish Model Organism Database) 777742 (Entrez Gene) ighv8-2 (Alliance of Genome Resources)	Chr3

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.