Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	TRPM1	HGNC:7146 (HGNC) 4308 (Entrez Gene) 603576 (OMIM) TRPM1 (Alliance of Genome Resources)	Chr15 q13.3	Chr15:31001065-31161160 (-) GRCh38	congenital stationary night blindness congenital stationary night blindness 1C	Q7Z4N2 (UniProt | EBI) NM_001252020 (RefSeq)
mouse	Trpm1	MGI:1330305 (MGI) 17364 (Entrez Gene) Gene Tree Trpm1 (Alliance of Genome Resources)	Chr7 Syntenic	Chr7:63803583-63919523 (+) GRCm39	congenital stationary night blindness 1C	ENSMUSG00000030523 (Ensembl Gene Model) ENSMUSP00000146226 (Ensembl) ENSMUST00000206277 (Ensembl)
rat	Trpm1	RGD:1597140 (Rat Genome Database) 361586 (Entrez Gene) Trpm1 (Alliance of Genome Resources)	Chr1 q22			Q2WEA5 (UniProt | EBI) NM_001037733 (RefSeq)
zebrafish	trpm1a	ZDB-GENE-070112-1372 (Zebrafish Model Organism Database) 791196 (Entrez Gene) trpm1a (Alliance of Genome Resources)	Chr7			NP_001074147 (RefSeq) NM_001080678 (RefSeq)
	trpm1b	ZDB-GENE-070424-31 (Zebrafish Model Organism Database) 569946 (Entrez Gene) trpm1b (Alliance of Genome Resources)	Chr25			NP_001103949 (RefSeq) NM_001110479 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.