Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	SHANK1	HGNC:15474 (HGNC) 50944 (Entrez Gene) 604999 (OMIM) SHANK1 (Alliance of Genome Resources)	Chr19 q13.33	Chr19:50659255-50719802 (-) GRCh38		Q9Y566 (UniProt | EBI) NM_016148 (RefSeq)
mouse	Shank1	MGI:3613677 (MGI) 243961 (Entrez Gene) Gene Tree Shank1 (Alliance of Genome Resources)	Chr7 28.83 cM	Chr7:43959677-44009996 (+) GRCm39		ENSMUSG00000038738 (Ensembl Gene Model) ENSMUSP00000103571 (Ensembl) ENSMUST00000107938 (Ensembl)
rat	Shank1	RGD:621011 (Rat Genome Database) 78957 (Entrez Gene) Shank1 (Alliance of Genome Resources)	Chr1 q22			Q9WV48 (UniProt | EBI) NM_031751 (RefSeq)
zebrafish	shank1	ZDB-GENE-130530-691 (Zebrafish Model Organism Database) 568908 (Entrez Gene) shank1 (Alliance of Genome Resources)	Chr3			XP_068074374 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.