Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	SOX9	HGNC:11204 (HGNC) 6662 (Entrez Gene) 608160 (OMIM) SOX9 (Alliance of Genome Resources)	Chr17 q24.3	Chr17:72121020-72126416 (+) GRCh38	campomelic dysplasia lung cancer lung carcinoma	P48436 (UniProt | EBI) NM_000346 (RefSeq)
mouse	Sox9	MGI:98371 (MGI) 20682 (Entrez Gene) Gene Tree Sox9 (Alliance of Genome Resources)	Chr11 77.27 cM	Chr11:112673050-112678586 (+) GRCm39	campomelic dysplasia	ENSMUSG00000000567 (Ensembl Gene Model) ENSMUSP00000000579 (Ensembl) ENSMUST00000000579 (Ensembl)
rat	Sox9	RGD:620474 (Rat Genome Database) 140586 (Entrez Gene) Sox9 (Alliance of Genome Resources)	Chr10 q32.1			F1LYL9 (UniProt | EBI) NM_080403 (RefSeq)
zebrafish	sox9a	ZDB-GENE-001103-1 (Zebrafish Model Organism Database) 60641 (Entrez Gene) sox9a (Alliance of Genome Resources)	Chr12			NP_571718 (RefSeq) NM_131643 (RefSeq)
	sox9b	ZDB-GENE-001103-2 (Zebrafish Model Organism Database) 60642 (Entrez Gene) sox9b (Alliance of Genome Resources)	Chr3			NP_571719 (RefSeq) NM_131644 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.