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Vertebrate Homology
Source
Alliance of Genome Resources

 
Alliance Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PCDHAC1 HGNC:8676 (HGNC)
56135 (Entrez Gene)
606320 (OMIM)
PCDHAC1 (Alliance of Genome Resources)
Chr5 q31.3 Chr5:140926299-141012347 (+)
GRCh38
Q9H158 (UniProt | EBI)
NM_018898 (RefSeq)
mouse Pcdhac1 MGI:1891442 (MGI)
353236 (Entrez Gene)
Gene Tree
Pcdhac1 (Alliance of Genome Resources)
Chr18 19.46 cM Chr18:37223189-37320710 (+)
GRCm39
353236 (NCBI Gene Model)
NP_001003671 (RefSeq)
NM_001003671 (RefSeq)
zebrafish pcdhb ZDB-GENE-020731-3 (Zebrafish Model Organism Database)
100333352 (Entrez Gene)
pcdhb (Alliance of Genome Resources)
Chr14 XP_002664314 (RefSeq)
si:ch73-233f7.1 ZDB-GENE-141215-5 (Zebrafish Model Organism Database)
100537710 (Entrez Gene)
si:ch73-233f7.1 (Alliance of Genome Resources)
Chr14 NP_001352110 (RefSeq)
NM_001365180 (RefSeq)
Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory