Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	COL18A1	HGNC:2195 (HGNC) 80781 (Entrez Gene) 120328 (OMIM) COL18A1 (Alliance of Genome Resources)	Chr21 q22.3	Chr21:45405165-45513720 (+) GRCh38	primary angle-closure glaucoma	P39060 (UniProt | EBI) NM_130444 (RefSeq)
mouse	Col18a1	MGI:88451 (MGI) 12822 (Entrez Gene) Gene Tree Col18a1 (Alliance of Genome Resources)	Chr10 39.72 cM	Chr10:76888013-77002351 (-) GRCm39	pigment dispersion syndrome	12822 (NCBI Gene Model) P39061 (UniProt | EBI) NM_001109991 (RefSeq)
rat	Col18a1	RGD:70936 (Rat Genome Database) 85251 (Entrez Gene) Col18a1 (Alliance of Genome Resources)	Chr20 p12			NP_445941 (RefSeq) NM_053489 (RefSeq)
zebrafish	col18a1a	ZDB-GENE-030516-3 (Zebrafish Model Organism Database) 564123 (Entrez Gene) col18a1a (Alliance of Genome Resources)	Chr9			NP_001336124 (RefSeq) NM_001039630 (RefSeq)
	col18a1b	ZDB-GENE-110411-288 (Zebrafish Model Organism Database) 100334893 (Entrez Gene) col18a1b (Alliance of Genome Resources)	Chr6			XP_021332753 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.