Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

 

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	IGHV1-2	HGNC:5550 (HGNC) 28474 (Entrez Gene) IGHV1-2 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:105986582-105987083 (-) GRCh38
	IGHV1-3	HGNC:5552 (HGNC) 28473 (Entrez Gene) IGHV1-3 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106005095-106005574 (-) GRCh38		A0A0C4DH29 (UniProt | EBI)
	IGHV1-18	HGNC:5549 (HGNC) 28468 (Entrez Gene) IGHV1-18 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106184899-106185394 (-) GRCh38		A0A0C4DH31 (UniProt | EBI)
	IGHV1-24	HGNC:5551 (HGNC) 28467 (Entrez Gene) IGHV1-24 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106276546-106277043 (-) GRCh38		A0A0C4DH33 (UniProt | EBI)
	IGHV1-38-4	HGNC:5560 (HGNC) 28460 (Entrez Gene) IGHV1-38-4 (Alliance of Genome Resources)	Chr14 q32.33			P0DTW3 (UniProt | EBI)
	IGHV1-45	HGNC:5553 (HGNC) 28466 (Entrez Gene) IGHV1-45 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106506996-106507491 (-) GRCh38		A0A0A0MS14 (UniProt | EBI)
	IGHV1-46	HGNC:5554 (HGNC) 28465 (Entrez Gene) IGHV1-46 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106511115-106511856 (-) GRCh38
	IGHV1-58	HGNC:5555 (HGNC) 28464 (Entrez Gene) IGHV1-58 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106622357-106622855 (-) GRCh38		A0A0C4DH39 (UniProt | EBI)
	IGHV1-69	HGNC:5558 (HGNC) 28461 (Entrez Gene) IGHV1-69 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106714682-106715181 (-) GRCh38		P01742 (UniProt | EBI)
	IGHV1-69-2	HGNC:5562 (HGNC) 28458 (Entrez Gene) IGHV1-69-2 (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106737110-106737547 (-) GRCh38		A0A0G2JMI3 (UniProt | EBI)
	IGHV1-69D	HGNC:49601 (HGNC) 102723169 (Entrez Gene) IGHV1-69D (Alliance of Genome Resources)	Chr14 q32.33	Chr14:106762092-106762588 (-) GRCh38		A0A0B4J2H0 (UniProt | EBI)
	IGHV1OR15-1	HGNC:5563 (HGNC) 388077 (Entrez Gene) IGHV1OR15-1 (Alliance of Genome Resources)	Chr15 q11.2
	IGHV1OR15-9	HGNC:5569 (HGNC) 390531 (Entrez Gene) IGHV1OR15-9 (Alliance of Genome Resources)	Chr15 q11.1
	IGHV1OR21-1	HGNC:38040 (HGNC) 390530 (Entrez Gene) IGHV1OR21-1 (Alliance of Genome Resources)	Chr21 p11.2	Chr21:10649390-10649835 (-) GRCh38
mouse	Ighv1-39	MGI:4439888 (MGI) 780891 (Entrez Gene) Gene Tree Ighv1-39 (Alliance of Genome Resources)	Chr12 62.46 cM	Chr12:114878219-114878512 (-) GRCm39		780891 (NCBI Gene Model) A0A075B5V5 (UniProt | EBI)
zebrafish	ighv2-1	ZDB-GENE-040514-2 (Zebrafish Model Organism Database) 100535575 (Entrez Gene) ighv2-1 (Alliance of Genome Resources)	Chr3
	ighv2-2	ZDB-GENE-030924-5 (Zebrafish Model Organism Database) 378757 (Entrez Gene) ighv2-2 (Alliance of Genome Resources)	Chr3
	ighv4-1	ZDB-GENE-040514-6 (Zebrafish Model Organism Database) 554306 (Entrez Gene) ighv4-1 (Alliance of Genome Resources)	Chr3

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.