Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	COL9A1	HGNC:2217 (HGNC) 1297 (Entrez Gene) 120210 (OMIM) COL9A1 (Alliance of Genome Resources)	Chr6 q13	Chr6:70215061-70303084 (-) GRCh38	multiple epiphyseal dysplasia 6 osteochondrodysplasia Stickler syndrome	P20849 (UniProt | EBI) NM_001851 (RefSeq)
mouse	Col9a1	MGI:88465 (MGI) 12839 (Entrez Gene) Gene Tree Col9a1 (Alliance of Genome Resources)	Chr1 9.95 cM	Chr1:24216691-24291765 (+) GRCm39	osteoarthritis	ENSMUSG00000026147 (Ensembl Gene Model) ENSMUSP00000051579 (Ensembl) ENSMUST00000054588 (Ensembl)
rat	Col9a1	RGD:1309425 (Rat Genome Database) 305104 (Entrez Gene) Col9a1 (Alliance of Genome Resources)	Chr9 q21			P20850 (UniProt | EBI) NM_001100842 (RefSeq)
zebrafish	col9a1a	ZDB-GENE-080721-25 (Zebrafish Model Organism Database) 100170785 (Entrez Gene) col9a1a (Alliance of Genome Resources)	Chr11			NP_001124096 (RefSeq) NM_001130624 (RefSeq)
	col9a1b	ZDB-GENE-040426-2410 (Zebrafish Model Organism Database) 406548 (Entrez Gene) col9a1b (Alliance of Genome Resources)	Chr13			NP_998429 (RefSeq) NM_213264 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.