Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	CASQ1	HGNC:1512 (HGNC) 844 (Entrez Gene) 114250 (OMIM) CASQ1 (Alliance of Genome Resources)	Chr1 q23.2	Chr1:160190575-160201886 (+) GRCh38	type 2 diabetes mellitus	P31415 (UniProt | EBI) NM_001231 (RefSeq)
mouse	Casq1	MGI:1309468 (MGI) 12372 (Entrez Gene) Gene Tree Casq1 (Alliance of Genome Resources)	Chr1 79.54 cM	Chr1:172037461-172047435 (-) GRCm39		ENSMUSG00000007122 (Ensembl Gene Model) ENSMUSP00000003554 (Ensembl) ENSMUST00000003554 (Ensembl)
rat	Casq1	RGD:1586677 (Rat Genome Database) 686019 (Entrez Gene) Casq1 (Alliance of Genome Resources)	Chr13 q24			P19633 (UniProt | EBI) NM_001159594 (RefSeq)
zebrafish	casq1a	ZDB-GENE-040801-139 (Zebrafish Model Organism Database) 445226 (Entrez Gene) casq1a (Alliance of Genome Resources)	Chr2			NP_001003620 (RefSeq) NM_001003620 (RefSeq)
	casq1b	ZDB-GENE-060929-1070 (Zebrafish Model Organism Database) 767757 (Entrez Gene) casq1b (Alliance of Genome Resources)	Chr7			NP_001070192 (RefSeq) NM_001076724 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.