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Vertebrate Homology
Source
 Alliance of Genome Resources

Comparative GO Graph (mouse, human, zebrafish)  
Alliance Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)		 Associated Human Diseases Sequences
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human PCDHA5 HGNC:8671 (HGNC)
56143 (Entrez Gene)
606311 (OMIM)
PCDHA5 (Alliance of Genome Resources)
 Chr5 q31.3 Chr5:140821604-141012347 (+)
GRCh38 		Q9Y5H7 (UniProt | EBI)
NM_031501 (RefSeq)
mouse Pcdha5 MGI:1298371 (MGI)
12941 (Entrez Gene)
Gene Tree
Pcdha5 (Alliance of Genome Resources)
 Chr18 19.46 cM Chr18:37093493-37320710 (+)
GRCm39 		ENSMUSG00000103092 (Ensembl Gene Model)
ENSMUSP00000142293 (Ensembl)
ENSMUST00000192168 (Ensembl)
zebrafish pcdh1a3 ZDB-GENE-050202-3 (Zebrafish Model Organism Database)
497126 (Entrez Gene)
pcdh1a3 (Alliance of Genome Resources)
 Chr10 NP_001019268 (RefSeq)
NM_001024097 (RefSeq)
pcdh1a4 ZDB-GENE-050202-4 (Zebrafish Model Organism Database)
497127 (Entrez Gene)
pcdh1a4 (Alliance of Genome Resources)
 Chr10 NP_001019270 (RefSeq)
NM_001024099 (RefSeq)
pcdh2aa1 ZDB-GENE-041118-13 (Zebrafish Model Organism Database)
493596 (Entrez Gene)
pcdh2aa1 (Alliance of Genome Resources)
 Chr14 NP_001009585 (RefSeq)
NM_001009585 (RefSeq)
pcdh2ab1 ZDB-GENE-041118-1 (Zebrafish Model Organism Database)
493589 (Entrez Gene)
pcdh2ab1 (Alliance of Genome Resources)
 Chr14 NP_001009588 (RefSeq)
NM_001009588 (RefSeq)
pcdh2ab2 ZDB-GENE-041118-2 (Zebrafish Model Organism Database)
493588 (Entrez Gene)
pcdh2ab2 (Alliance of Genome Resources)
 Chr14 NP_001009592 (RefSeq)
NM_001009592 (RefSeq)
pcdh2ab3 ZDB-GENE-041118-3 (Zebrafish Model Organism Database)
493590 (Entrez Gene)
pcdh2ab3 (Alliance of Genome Resources)
 Chr14 NP_001008484 (RefSeq)
NM_001008484 (RefSeq)
pcdh2ab5 ZDB-GENE-041118-4 (Zebrafish Model Organism Database)
493591 (Entrez Gene)
pcdh2ab5 (Alliance of Genome Resources)
 Chr14 NP_001008483 (RefSeq)
NM_001008483 (RefSeq)
pcdh2ab6 ZDB-GENE-041118-5 (Zebrafish Model Organism Database)
493592 (Entrez Gene)
pcdh2ab6 (Alliance of Genome Resources)
 ChrUN NP_001009593 (RefSeq)
NM_001009593 (RefSeq)
pcdh2ab7 ZDB-GENE-041118-6 (Zebrafish Model Organism Database)
493593 (Entrez Gene)
pcdh2ab7 (Alliance of Genome Resources)
 ChrUN NP_001009594 (RefSeq)
NM_001009594 (RefSeq)
pcdh2ab10 ZDB-GENE-041118-9 (Zebrafish Model Organism Database)
493598 (Entrez Gene)
pcdh2ab10 (Alliance of Genome Resources)
 Chr14 NP_001009589 (RefSeq)
NM_001009589 (RefSeq)
pcdh2ab11 ZDB-GENE-041118-10 (Zebrafish Model Organism Database)
493599 (Entrez Gene)
pcdh2ab11 (Alliance of Genome Resources)
 Chr14 NP_001009590 (RefSeq)
NM_001009590 (RefSeq)
pcdh2ab12 ZDB-GENE-041118-11 (Zebrafish Model Organism Database)
493600 (Entrez Gene)
pcdh2ab12 (Alliance of Genome Resources)
 Chr14 NP_001009591 (RefSeq)
NM_001009591 (RefSeq)
pcdha8l ZDB-GENE-141215-68 (Zebrafish Model Organism Database)
108179154 (Entrez Gene)
pcdha8l (Alliance of Genome Resources)
 Chr14 XP_017214536 (RefSeq)
Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory