Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	ATXN1	HGNC:10548 (HGNC) 6310 (Entrez Gene) 601556 (OMIM) ATXN1 (Alliance of Genome Resources)	Chr6 p22.3	Chr6:16299112-16761491 (-) GRCh38	spinocerebellar ataxia type 1	P54253 (UniProt | EBI) NM_001128164 (RefSeq)
mouse	Atxn1	MGI:104783 (MGI) 20238 (Entrez Gene) Gene Tree Atxn1 (Alliance of Genome Resources)	Chr13 21.98 cM	Chr13:45703231-46118467 (-) GRCm39	spinocerebellar ataxia type 1	20238 (NCBI Gene Model) P54254 (UniProt | EBI) NM_001199305 (RefSeq)
rat	Atxn1	RGD:3624 (Rat Genome Database) 25049 (Entrez Gene) Atxn1 (Alliance of Genome Resources)	Chr17 p14			Q63540 (UniProt | EBI) NM_012726 (RefSeq)
zebrafish	atxn1a	ZDB-GENE-060503-759 (Zebrafish Model Organism Database) 557340 (Entrez Gene) atxn1a (Alliance of Genome Resources)	Chr19			NP_001038291 (RefSeq) NM_001044826 (RefSeq)
	atxn1b	ZDB-GENE-061218-2 (Zebrafish Model Organism Database) 565841 (Entrez Gene) atxn1b (Alliance of Genome Resources)	Chr16			XP_005158216 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.